Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00042 ATGGAGAAAGAGGGTGTTGTTGGAGTTTTTGGGGTTATGGGTAGGTGTTGGTTAGTTGGAGTCATAATTGTAGTGGGGTGTACCACCTTGTTTGGCAGTGTTGGAGTAGAAGGGTATCCAGATGAGGATTTGGTGGTGAAATTGCCTGGTCAACCTAAGGTTGGGTTTAAGCAGTTTGCTGGGTATGTTGATGTTGATGTCAAGCATGGAAGGAGCCTCTTCTACTATTTTGTGGAAGCTGAAAAAGACCCTCACAAGAAGCCCCTCACCCTTTGGCTCAATGGAGGTCCTGGATGTTCCTCAATTGGAGGAGGTGCTTTTACTGAATTGGGACCCTTTTATCCCAAAGGTGATGGACGTGGTCTCAGAAGAAATTCGATGTCTTGGAATAAAGCATCCAACCTCCTTTTTGTGGAGTCTCCCGCTGGAGTTGGTTGGTCATACTCAAATACATCTTCAGATTATAACACTGGAGATGCCGCCACTGCCAATGATATGTATTTGTTCATGCTGAAATGGTACGAGAAGTTTCCATCATACCGAACAAGAGAGCTGTTTCTCACTGGAGAAAGCTATGCAGGACACTATATACCACAATTAACTAATGCTTTATTGGACCACAATGCTCGTTCCACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTTTGAGACTTGATCGGGATGCACCTGCAACATATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTGCCATTATGAATGATTGTGATTTTGATGATTATGTGTATGCAAGTCCTCACAATGTTTCTCATTCCTGCAACAATGCCATATATGAAGCAAATCTCATTGTTGGTGACTACATAAACAGCTATGATGTAATACTAGATGTTTGTTATCCATCCTTAATGGAACAAGAACTTAGATTGAAAAGGATGGCAACTAAAATAAGTGTTGGTGTAGATGTGTGTATGACTCTAGAAAGACGTTTTTACTTCAATCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACAAATCTTCCTTATAGCTGGTCCATGTGTAGTCGTGATCTAAACTATAGCGACACTGATGGTAACATCAACATTCTCCCAATTCTCAAGAGGATAATCCAAAACCATATCCCAGTATGGGTTTTCAGCGGAGATCAAGATTCCGTTGTGCCATTATTGGGATCTCGAACTCTCATTCGTGAGTTAGCTCATGAATTGAAATTCAAGATTACAGTCCCATATGGTGCTTGGTTCCACAAAGGGCAGGTTGGAGGTTGGGTAACTGAGTATGGAAATTTGTTGACCTTTGCGACTGTAAGGGGAGCTGCACACATGGTACCTTATGCACAACCTTCAAGAGCACTGCACCTATTCAGTTCATTTGTGCATGGCAGGAGGTTGCCCAACACAACACGTCCTTCAATTGATTAA 1455 0.4213 MEKEGVVGVFGVMGRCWLVGVIIVVGCTTLFGSVGVEGYPDEDLVVKLPGQPKVGFKQFAGYVDVDVKHGRSLFYYFVEAEKDPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTSSDYNTGDAATANDMYLFMLKWYEKFPSYRTRELFLTGESYAGHYIPQLTNALLDHNARSTGFKFNIKGVAIGNPLLRLDRDAPATYEYFWSHGMISDEIGLAIMNDCDFDDYVYASPHNVSHSCNNAIYEANLIVGDYINSYDVILDVCYPSLMEQELRLKRMATKISVGVDVCMTLERRFYFNLPEVQKALHANRTNLPYSWSMCSRDLNYSDTDGNINILPILKRIIQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHELKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNTTRPSID 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00042 484 SUPERFAMILY alpha/beta-Hydrolases 41 475 IPR029058 -
Cca05g00042 484 Gene3D - 373 472 - -
Cca05g00042 484 Pfam Serine carboxypeptidase 50 472 IPR001563 GO:0004185|GO:0006508
Cca05g00042 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Cca05g00042 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Cca05g00042 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Cca05g00042 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 442 455 IPR001563 GO:0004185|GO:0006508
Cca05g00042 484 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Cca05g00042 484 PANTHER CARBOXYPEPTIDASE 17 479 - -
Cca05g00042 484 Gene3D - 326 362 - -
Cca05g00042 484 Gene3D alpha/beta hydrolase 40 302 IPR029058 -
Cca05g00042 484 ProSitePatterns Serine carboxypeptidases, serine active site. 187 194 IPR018202 GO:0004185
Cca05g00042 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 479 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00042 Cca-Chr5 1048611 1054696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00042 332 475 Calmodulin-binding Proteins AT2G22960 25.694 2.94e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00042 K16297 - gmx:100801752 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00042 05 1048611 1054696 Cca05g00042 05 1048611 1054696 ECH