Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00040 ATGGAGCATGGAAGCCCCTCCATTTCCGATGACTCTCTAGCAAAATCAAGCCTAGATTCAAAGGCTTTGCAGGCAGAGAAAGAGAATCCTTCGGCAAACAACGTTGGCGCTGAAACTGGGTCACGTGGTGTAAATGACGCACCTGGCAGTGTGGGTTTACCGGAAGATGACCGGTGCATGCCGGTCACAAATTTGGTGAGGATCATGCGAAAGGTGCTTCCCCCGCAAGCGAAAGTTGCTGAACAAGCCAAGGAAACAATGCAAGTGTGTGTATCCGAGTTCATAGGTTTCATCACCAGCGAGGCCAATGAGCGCTGCCAGAAGGAGCACCGTAGGATCGTTACGGCCGAAGACATATTGTGGGCCATGGACACGCTGGGCTTCGACAACTATGTTGGGCCTCTTGTTTCCTTCCTCAAACGTTATCGTCAAAGTGAGGTTCCAAATCTTGGGGGGCGTGGTCGTGTTCCTTTGCCGCAAGTTGTTGGAACTTATCCTATTATATCCTcatcatcatcaccatcaccatcaccatcaccatcaTTGTTATCACCGCAATACATGATGGCTTGTTATGGACCAAATTTCCCTCCAAGCCAAAATTGGTGTCAAGGAATGTTTGATTCAAGTGGCATGTGTGAGTTTTATGATGATGCATCAGGTGGCAGTGGTAATGTGGTGTCTGATTTTGATCCTCTTAATATTCACAAACGAGCATGA 720 0.4569 MEHGSPSISDDSLAKSSLDSKALQAEKENPSANNVGAETGSRGVNDAPGSVGLPEDDRCMPVTNLVRIMRKVLPPQAKVAEQAKETMQVCVSEFIGFITSEANERCQKEHRRIVTAEDILWAMDTLGFDNYVGPLVSFLKRYRQSEVPNLGGRGRVPLPQVVGTYPIISSSSSPSPSPSPSLLSPQYMMACYGPNFPPSQNWCQGMFDSSGMCEFYDDASGGSGNVVSDFDPLNIHKRA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00040 239 MobiDBLite consensus disorder prediction 1 56 - -
Cca05g00040 239 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Cca05g00040 239 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Cca05g00040 239 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Cca05g00040 239 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 123 IPR003958 -
Cca05g00040 239 Gene3D Histone, subunit A 51 152 IPR009072 GO:0046982
Cca05g00040 239 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 32 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca05g00040 239 MobiDBLite consensus disorder prediction 9 40 - -
Cca05g00040 239 SUPERFAMILY Histone-fold 56 146 IPR009072 GO:0046982
Cca05g00040 239 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 32 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00040 Cca-Chr5 1005956 1008702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00040 55 147 CCAAT-HAP3 Transcription Factor Family AT1G21970 62.366 1.06e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca05g00040 CBFD_NFYB_HMF 1.6e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00040 K08065 - tcc:18593281 149.058