Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00028 ATGAATAGTCAGAACCCAAAAAGTCCATTAGTAGATGAAAGCTTATATGATATTTTCAAAGACACAGAATTTGGGAAACACCACTTGGGTGTTGGAGAGGATCTCTTTGCCATTTTGGAGAGCCTAGAAGAATTGAGCGATTTTCCTCCCATCAACAATGATGCTGTTATTAGCCCAACTTCGAAAGAAAACGAGCAAAGCTCCCAAAAGGTCTCAATATCTTCAAGTGCTTGTGCTCCACAAGATTCTGAAACTGAGCATGAAATCTCACCCAAAAGTAAGAGACAAAAGCTTGGTCCCACATCGCCTGAGGAACCACCGAGGATGTCTCACATAACTGTGGAGCGCAACCGAAGAAAGCTAATGAATGAGAACTTGTCTGTCTTGAGGTCACTTATGCCTTCCTTTTATGTCAAACGGGGTGACCAAGCATCAATAATTGGAGGTGTGGTGGATTACATCAACGAGTTGCAGCAACTGTTACAATGCCTTGAGGCCAAGAAACAAAGAAAAGCTTACACTGATGTACTTAGCCCTAGGGTAGTTTCAAGCCCAAGGCCTTCACCACTGAGCCCTAGGAAACCACCCTTGAGCCCTAGAATAAACCTTCCCATTAGTCCAAGGACTCCACAGCCAGGTAGCCCTTACAAGCCCAGGTTGCAGCAAGGTTACATTTCCCCAACCATAACCAACtctcctacttcttctgcttcttcttcAATCAACGATAATATCAATGAGCTTGTTGCAAATTCGAAATCCGTTGTTGCCGATGTGGAGGTCAAGTTTTCAGGTCCACATGTTCTTCTGAAGACTGTGTCACCACCAATTCCAGGCCAGGCCATGAGAATAATATCAGCACTTGAAGACCTAGCACTCGAAATCCTCCACGTGAGCATTAGCACAGCTGATGAAACCATGCTAAACTCATTCACCATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1008 0.4315 MNSQNPKSPLVDESLYDIFKDTEFGKHHLGVGEDLFAILESLEELSDFPPINNDAVISPTSKENEQSSQKVSISSSACAPQDSETEHEISPKSKRQKLGPTSPEEPPRMSHITVERNRRKLMNENLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQLLQCLEAKKQRKAYTDVLSPRVVSSPRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPRLQQGYISPTITNSPTSSASSSINDNINELVANSKSVVADVEVKFSGPHVLLKTVSPPIPGQAMRIISALEDLALEILHVSISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00028 335 MobiDBLite consensus disorder prediction 177 218 - -
Cca05g00028 335 Gene3D - 101 172 IPR036638 GO:0046983
Cca05g00028 335 CDD bHLH_AtFAMA_like 109 182 - -
Cca05g00028 335 SMART finulus 112 163 IPR011598 GO:0046983
Cca05g00028 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 180 IPR036638 GO:0046983
Cca05g00028 335 PANTHER TRANSCRIPTION FACTOR FAMA 12 335 IPR044283 GO:0003700|GO:0010052
Cca05g00028 335 MobiDBLite consensus disorder prediction 49 111 - -
Cca05g00028 335 MobiDBLite consensus disorder prediction 53 83 - -
Cca05g00028 335 Pfam Helix-loop-helix DNA-binding domain 108 158 IPR011598 GO:0046983
Cca05g00028 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Cca05g00028 335 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 12 335 - -
Cca05g00028 335 MobiDBLite consensus disorder prediction 85 101 - -
Cca05g00028 335 MobiDBLite consensus disorder prediction 185 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00028 Cca-Chr5 632688 635823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00028 17 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.275 5.58e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g00028 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00028 K20558 - gmx:100809717 480.715