Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00027 ATGGGAGATTGGGATTGTAGCAACCTCATTCATGTGCTACAACAAGGCATGGAAGTGGCAAAGCAACTCCAAATCTCTCTCCACGCGCCTTATTCGTCGCAAGAAAGCCACGAGCTTCTAATCGAGAAGATCATAGACGCATTTGAAAAGGCTCTTAAAATGGTGAACTTGAAGATGGGGTTAGTGGGTCGTCCTTCTTCACAAATGTTGCACTCAAGGGTTGCAATTCGAACTTCACAATCACCACCTTTGAGCGGAAGTCCTCGCAATGGAAACTCAGACAAAGATCTGAGGGAAATCAACCGTAGTTCCCCCAACGAAAGGAGGACTAAACCAAGTTGGACAAAACAGATTCGAGTTACCCCGGGGATGGGAGTGGAAGGGTCTCTTGATGATGGATATACTTGGAGAAAATATGGCCAGAAAAGCATACATGGAGCTAAGTATCCAAGAGGCTATTATAGATGTGCCCAAAGAAATTTTGAAGGTTGCATGGCCACAAAGCAAGTGCAAAGATCCGATCAAGACCCAACAGTGTTTGAAATCCATTACCGGGGAAACCACACATGCACAATGGCTTCCTTTGCAGTTCCAACATTAGGGATCCCAGAAAATCAAGAACCAAATTTTACTACAATTCCACAGCAGCAACCAAGTGATGCTATGAATCTCCATTTACGGCTAGGAGTCCTAACGGAGAACCTAGATCAATCGTTTGCCTCATCATTCCACCAACTTTTGACTTCAACTATAAAAAAGGAAGAGCAAGTTTTCCCTTCCCCAATCATTGAAAACAACTATGCTCAAAATTTCAATTGCCCTTCTTATGTGTCCCCATCTGACACAACTTATTTTTCGGTTGACAACTTTAGAGGGCACCCTTTGGCAAGTTCTGGAAGTGAGGTCAATGACATGATTTCAGCGGTTACATCAGCTGCTAACTCTCCAACACTTGCAAGCTTAAACTTCCCATTTGATCAGTTTCATATATTAGACGGCCAAAACTTTACCTTTGATAACTCACCATTCTCCTAA 1035 0.4309 MGDWDCSNLIHVLQQGMEVAKQLQISLHAPYSSQESHELLIEKIIDAFEKALKMVNLKMGLVGRPSSQMLHSRVAIRTSQSPPLSGSPRNGNSDKDLREINRSSPNERRTKPSWTKQIRVTPGMGVEGSLDDGYTWRKYGQKSIHGAKYPRGYYRCAQRNFEGCMATKQVQRSDQDPTVFEIHYRGNHTCTMASFAVPTLGIPENQEPNFTTIPQQQPSDAMNLHLRLGVLTENLDQSFASSFHQLLTSTIKKEEQVFPSPIIENNYAQNFNCPSYVSPSDTTYFSVDNFRGHPLASSGSEVNDMISAVTSAANSPTLASLNFPFDQFHILDGQNFTFDNSPFS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00027 344 Gene3D WRKY domain 124 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00027 344 MobiDBLite consensus disorder prediction 76 91 - -
Cca05g00027 344 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00027 344 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00027 344 Pfam WRKY DNA -binding domain 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00027 344 MobiDBLite consensus disorder prediction 76 116 - -
Cca05g00027 344 MobiDBLite consensus disorder prediction 92 106 - -
Cca05g00027 344 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 341 - -
Cca05g00027 344 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 341 IPR044810 GO:0003700
Cca05g00027 344 ProSiteProfiles WRKY domain profile. 125 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00027 Cca-Chr5 606052 608251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00027 1 236 WRKY Transcription Factor Family AT4G23810 34.615 1.07e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g00027 WRKY 4.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00027 - - ccaj:109795434 704.901