Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00021 ATGGAATGCAACAAAGATGAGGCGGCTAGGGCCAAAGAAATAGCAGAGAGGAAAGTTTCTGAAGGGGATTATGCTGGTGCAAAAAAATTTGCTCTCAAGGCTCTAAGTTTGTTTCCTGCACTGGAGGGTATTTCCCAGCTTTTAACAACTCTTGATGTTTATATCTCTTCCGAGAAAAAAATAAATGGAGAAGTGGATTGGTATGGTATACTTGGAGTGGTTCCATTTGCTAATGAAGAGATGGTTAGGAAGCAGTATAGAAAGCTAGCTCTCACTCTTCACCCTGACAAAAACAAGTCTCCAGGTGCAGAAGGTGCATTTAAGCTTGTTTCAGAGGCATGGAGTTTTCTATCGGATAAGGTTAAAAGACTAGCATATAACCAGAACAGGAAATCGAAAGGATTTCAGCATAATGCTCCCAACCATGTTGGGTCTCAATCAAAAGCACCCAGTTCAAATGGCTCTTATAATCTTAACAAGAATGCAACTTCAAGCGTGAGAGCTGGAAATAGTGATGCTCGGGCACATCCGACCTCCATTCCTACTGGAAATAGTGATGCTCGGTCACGTCCAACCTCCATTCCTCCTGGAAATAGTGATGCTCGGGCACAACCAACCTCCATTCCTCCTGGAAATAGTGATGCTCGAGCACATCCAACCTCCATTCCTCCTCCTCATACAAAGGCTGGTACCTTTTGGACTCTCTGCAATAGCTGCAGGACATATTATGAGTATCTCAGGACTTATTTGAATCAAACCCTTTTATGTCCAAATTGCAATGATGCTTTTGCGGCTGTGGAGACAGGCCCACCTCCCAATGTTTCTAAGTCATCTAATTTGTCTTCTAGGCAACATCCTCAGAAGTCTTCTCGGGAACATCCCAATGTTGGAAGGAAGCAGCCAGTGAATCCAGGAAAAACTGGTGCAGTTTCTCAAAATTTACAATCCAGCAGTTCTACAGGCACATCTTTTAATAACACAAACTTCCAGTGGGGCCCCTTCTCTAGAATGGCTGGTTTTGTTAGAAGAGATGGATCATCATCTGTTGCTGCGGCAAATGTTAAGCAGCAGTCAAGTGAGACAAGAAGAGGTGAGGGAGCCCCGTCAATTGCCGCCCAGGAGAGGAGTCATTTGCATAAGAGGCCTGATGGTCCTTTTAGCAATGTCGAAAATCCTAAGGAAAATCCCATGAAGAAAACAAGGACAGACGATATTTATGTGTCTAATGCAAATCATACGACCATGAGAAATGGATCAAACAGTTTTGGCCATTTTTATGAATCAGGAAAAGCTAACATGGGAACAGAAAGGACTCATGGTTTTTCAGGTATTGGTATCAAGCGATACAGCATGAAAGAGTTGTCGTCCTTTGAATTACGTAATATGTTGATTGGTAAGGCACATACTGAAATTCACAAGAAACTTCAAGAATGGAGAACGATGGCTGAAGCTAAGATTACAATCAAGGACAAAGGAAGCAGGACACAGAAAAGTGCATTCAATGGCAAAACAACTGGTTCAGAGAAGCATGGAGGTTCCACTATTAATGGCAACAGGCATGTGGACACTGATTCTATCCCAGTCGCGGGTGATGATACTGTAAAGGAGAAGTCGGCCTATGTAACAATGAACGTTCCAGATCCTGATTTTCACAATTTTGACTTGGATAGAACTGAAAATTCCTTTGCAGAGGACCAGGTCTGGGCTGCTTACGATAATGATGATGGAATGCCCCGCTATTATGCTAGAATTCACAAGGTGGTTTCAACAAAGCCATTTAGAATGCGGATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTACAAAACCTGTGGGGATTTCAGGACTGGCAGGCATGAAATAACTGAATCATTAAATTCCTTTTCACATAAGGTAAGGTGGACAAAAGGCGCCAGAGGAGTTGTTCACATCTTTCCTGGGAAGGGAGAAGTCTGGGCTCTCTATAGAAACTGGGCTCCTGATTGGGATGAAAATACTCCAGATGAAGTTATACACAAGTATGATATGGTGGAAGTGCTTGAAGATTTCAATGAAGAGGAAGGTGTATTGGTCACACCACTTGTTAAGGTTGATGGTTTTAAGACGGTGTTTCACAGACACAGTCATGATCAGGCAAGAAAGATTCCTAAGGTCGAGATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTCCTTACGGGGCAAGAAGCTCATAATGCTCCAAAGGACTGTCGAGAGTTGGATCCAGCAGCTACTCCTTTAGACTTAATTCAGACAGCAGCTGAAGCTAACGAGGCGTCGGATAATGTTGGAAAAACAAAGGGAGACACTTTCCCAGGATCACCTGAAAAAGAAGCTGCAGGTAAGGGGGAGAATGCTTCAAAGCCTAGTAGAGCAGACATGTTAGACGAGGATGGTAAAACAGGTAAAACATCATAG 2472 0.4312 MECNKDEAARAKEIAERKVSEGDYAGAKKFALKALSLFPALEGISQLLTTLDVYISSEKKINGEVDWYGILGVVPFANEEMVRKQYRKLALTLHPDKNKSPGAEGAFKLVSEAWSFLSDKVKRLAYNQNRKSKGFQHNAPNHVGSQSKAPSSNGSYNLNKNATSSVRAGNSDARAHPTSIPTGNSDARSRPTSIPPGNSDARAQPTSIPPGNSDARAHPTSIPPPHTKAGTFWTLCNSCRTYYEYLRTYLNQTLLCPNCNDAFAAVETGPPPNVSKSSNLSSRQHPQKSSREHPNVGRKQPVNPGKTGAVSQNLQSSSSTGTSFNNTNFQWGPFSRMAGFVRRDGSSSVAAANVKQQSSETRRGEGAPSIAAQERSHLHKRPDGPFSNVENPKENPMKKTRTDDIYVSNANHTTMRNGSNSFGHFYESGKANMGTERTHGFSGIGIKRYSMKELSSFELRNMLIGKAHTEIHKKLQEWRTMAEAKITIKDKGSRTQKSAFNGKTTGSEKHGGSTINGNRHVDTDSIPVAGDDTVKEKSAYVTMNVPDPDFHNFDLDRTENSFAEDQVWAAYDNDDGMPRYYARIHKVVSTKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGRHEITESLNSFSHKVRWTKGARGVVHIFPGKGEVWALYRNWAPDWDENTPDEVIHKYDMVEVLEDFNEEEGVLVTPLVKVDGFKTVFHRHSHDQARKIPKVEMFRFSHQVPNYFLTGQEAHNAPKDCRELDPAATPLDLIQTAAEANEASDNVGKTKGDTFPGSPEKEAAGKGENASKPSRADMLDEDGKTGKTS 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00021 823 Pfam Domain of unknown function (DUF3444) 542 747 IPR024593 -
Cca05g00021 823 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cca05g00021 823 PANTHER HEAT SHOCK PROTEIN-LIKE 1 780 - -
Cca05g00021 823 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Cca05g00021 823 MobiDBLite consensus disorder prediction 270 328 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 493 521 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 305 328 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 271 285 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 349 399 - -
Cca05g00021 823 SMART dnaj_3 65 122 IPR001623 -
Cca05g00021 823 MobiDBLite consensus disorder prediction 773 823 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 131 214 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 799 823 - -
Cca05g00021 823 Pfam DnaJ domain 66 127 IPR001623 -
Cca05g00021 823 CDD DnaJ 66 119 IPR001623 -
Cca05g00021 823 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cca05g00021 823 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cca05g00021 823 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cca05g00021 823 PANTHER BNAC03G44070D PROTEIN 1 780 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 131 229 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 349 364 - -
Cca05g00021 823 MobiDBLite consensus disorder prediction 491 529 - -
Cca05g00021 823 SUPERFAMILY Chaperone J-domain 48 126 IPR036869 -
Cca05g00021 823 Gene3D DnaJ domain 64 173 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00021 Cca-Chr5 439975 444587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00021 4 127 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.000 7.53e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00021 - - ccaj:109791144 1676.76