Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00020 ATGGTATGCAGCAGTTGTGTAAGGTCTTTGTTTGTTCAAGCTGGAATCTTCGCCAACAGAGTGAAAATCAACGGCATTGGGAGGAGTTTGCGAGCAGCTCGTGGTTTTTCTTATTGGCCAATTCGTGAATACAAGACAAGCATAGGGATGATGGTTGATACGGGTTCTATGTCTAGGGCCGGACCTCTGGTTGATATGATGCCAGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAAAGTGAAGATGGAGGACTTAGCTGTGGTTATTCAAGTTTTAGGGGGAAGAGAGTGACAATGGAGGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTCTTTGATAACCTCGTGAAGCATCCCAAATTTTTGACAGATGCCAAATTGGCAATAAGTGAAACATATCAACAGACTGATGCGGATTTTCTGGATTCCGAAAAGGAAACCTTCAGGGATGATGGATCTACAGCTTCAACAGCGGTTTTGATTGATAACCATCTTTATGTAGCTAATGTCGGAGATTCCAGGACTATAATATCAAAAGCTGGTAAAGCAATTGCTCTCTCTGAGGATCATAAGCCAAATAGAAGTGATGAGCGAAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACATGGAGGGTAGGAGGGGTTCTTGCAATGTCTCGTGCCTTTGGTAACCGTATGTTGAAGCAGTTTGTTGTAGCAGAACCTGAGATCCAGGACCAGAAGATAGATGAACAAATTGAACTGCTTATTCTTGCTAGTGATGGACTCTGGGATGTAGTACAGAATGACGATGCTGTTTCTCTTGCCCGCGCAGAAGAGGAGCCTGAGGCAGCTGCTCGAAAGTTGACAGAAGCAGCATTTTCTCGTGGTAGTGCAGATAACATTACATGCATTGTGGTTCGCTTCCATCAAGACAAAACAGACCTAGCTAATCCTGACAAAGCAGAATCAGCTGGTGCTCAACACGAGCAGACCAAGTGA 1080 0.4389 MVCSSCVRSLFVQAGIFANRVKINGIGRSLRAARGFSYWPIREYKTSIGMMVDTGSMSRAGPLVDMMPEKDDDGRFASGGWKSEDGGLSCGYSSFRGKRVTMEDFYDIKTLKIGGQSICLFGIFDGHGGSRAAEYLKEHLFDNLVKHPKFLTDAKLAISETYQQTDADFLDSEKETFRDDGSTASTAVLIDNHLYVANVGDSRTIISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQKIDEQIELLILASDGLWDVVQNDDAVSLARAEEEPEAAARKLTEAAFSRGSADNITCIVVRFHQDKTDLANPDKAESAGAQHEQTK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00020 359 Gene3D - 81 359 IPR036457 -
Cca05g00020 359 Pfam Protein phosphatase 2C 91 328 IPR001932 -
Cca05g00020 359 CDD PP2Cc 89 335 IPR001932 -
Cca05g00020 359 SMART PP2C_SIG_2 84 335 IPR001932 -
Cca05g00020 359 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 42 348 - -
Cca05g00020 359 SUPERFAMILY PP2C-like 87 336 IPR036457 -
Cca05g00020 359 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Cca05g00020 359 SMART PP2C_4 79 333 IPR001932 -
Cca05g00020 359 ProSiteProfiles PPM-type phosphatase domain profile. 89 335 IPR001932 -
Cca05g00020 359 PANTHER ALPHABET, ISOFORM E-RELATED 42 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00020 Cca-Chr5 410412 420479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00020 1 356 PP2C-type Phosphatase Gene Family AT5G53140 69.022 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00020 K17506 - gmx:100813138 654.825