Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00019 ATGATGAGTACTACACAGCAAGAGAAGTTTGTTAGGTTTCAGGATTCGAATTCAGAGAAGGGTTCTGAGAGCAGTTATCCTGCAATTAAGATAACAACACAATCAGGGAGATTTAGAACTACAATGAGTTCAGTTTCTGAGAAGTTTCAACATGGATTAGAATCTGGTTCTGAGAGGATAAAGAGATTCAGAACATCATTCAAATCTTTTCCTTATAGTGGAGTTCTTTCTAGAAGCTTTAGTTCTAGAAAGAAAATCCTTGATCCACAGGGTCCGTTCCTTCAAAAGTGGAACAAGATTTTTGTATTATTATGTGTTATTGCAGTATCGCTGGATCCCTTGTTCTTTTATGTCCCGGTTATTGATGATGAGAAGAAATGTCTTTCACTGGACAGCAACATGGAGATTACAGCCACTGTTTTAAGATCTTTCTCAGATGCTTTTTATATTATCCACATGATTTTCCAATTTCATACTGGATTCATTGCTCCCTCTTCTCGTGTTTTTGGAAGAGGCGTTTTGGTTGAAGATTCTTGGGCAATTGCACAAAGGTATCTGTCGTCATATTTCTTAGTTGACATTCTTGCTGTTCTGCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGCTTTAAATCACTTAATACAAAGAACCTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCTCGTCTATTGCGAATAATTCCATTATATAAGGAAGTTACACGGACCTCTGGTATTCTTACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTGTTGGTGCCTTTTGGTACTTGTTTTCCATAGAACGAGAAACCACATGTTGGCAAGAAGCATGTCGAAGTAATACACTGTGTAACAAGGCAGATATGTATTGTAATGATTATTGGGGTGGGTTGAGCAAAATTTCGACATTCCTGAATACTTCTTGCCCAATACAGAATGAAGATAAAAAGCTCTTTGATTTTGGAATATTTCTTGATGCCCTTCAATCCGGTGTTGTGCAGTCAAGAGATTTCCCACAAAAATTCTTTTACTGCTTTTGGTGGGGCCTAAAAAATTTAAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCTATGTTTGGGAAATCTGTTTTGCAGTTTTCATTGCTGTTTCTGGATTGGTATTATTTTCATTCCTCATTGGAAACATGCAGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTTAAAAGGAGGGATGCAGAACAGTGGATGTCCCATCGATTGCTTCCTGACAGCTTACGTGAGCGAATCAGACGATATGAACAGTACAGATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGATTAGTAATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGTTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGATCAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTCTACACAGAAGAAAGCTACATTGTACGGGAAGGAGATCCGGTCGATGAGATGCTCTTCATCATGCGTGGCAAGCTGCTGACGATGACCACTAATGGCGGAAGAACCGGCTTCTTCAACTCTGAGTACCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCCACCTCAACCAGGACTGTGCAAACCCTTTCAGAAGTGGAAGCCTTTGCCCTGAAAGCCGATGACTTGAAGTTCGTGGCGTCGCAGTTCCGGCGCCTCCACAGTAAACAGCTGCGGCACACTTTCAGGTTCTACTCGCAGCAATGGCGCACGTGGGCTGCATGTTTCATACAAGCAGCATGGCGACGCTATAGTAAAAAGAAGCTTGAAGAGTCTCTGGTTGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAAGCAGGTGGTAGCTCACCAAGCCTTGGTGCAACAATATATGCTTCAAGGTTTGCTGCTAATGCACTTAGATTGTTACGTCGTAATGGAACAAAGAAGGGTAGGGTGCCTGAGAGATTACCACCCATGCTGCCTCAGAAGCCTGCAGAACCTGATTTTACTGCTGATGAGGAATAG 2160 0.4227 MMSTTQQEKFVRFQDSNSEKGSESSYPAIKITTQSGRFRTTMSSVSEKFQHGLESGSERIKRFRTSFKSFPYSGVLSRSFSSRKKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDSNMEITATVLRSFSDAFYIIHMIFQFHTGFIAPSSRVFGRGVLVEDSWAIAQRYLSSYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACRSNTLCNKADMYCNDYWGGLSKISTFLNTSCPIQNEDKKLFDFGIFLDALQSGVVQSRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEICFAVFIAVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYEQYRWQETRGVDEDNLISNLPKDLRRDIKRHLCLALLMRVPMFEKMDDQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLVEEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNGTKKGRVPERLPPMLPQKPAEPDFTADEE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00019 719 ProSiteProfiles cAMP/cGMP binding motif profile. 490 574 IPR000595 -
Cca05g00019 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 717 - -
Cca05g00019 719 SMART cnmp_10 490 621 IPR000595 -
Cca05g00019 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 8 717 - -
Cca05g00019 719 Pfam Ion transport protein 97 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca05g00019 719 Gene3D Jelly Rolls 488 608 IPR014710 -
Cca05g00019 719 MobiDBLite consensus disorder prediction 1 24 - -
Cca05g00019 719 Coils Coil 642 662 - -
Cca05g00019 719 MobiDBLite consensus disorder prediction 690 719 - -
Cca05g00019 719 CDD CAP_ED 490 621 IPR000595 -
Cca05g00019 719 Gene3D Helix hairpin bin 416 481 - -
Cca05g00019 719 Gene3D - 97 414 - -
Cca05g00019 719 SUPERFAMILY Voltage-gated potassium channels 88 412 - -
Cca05g00019 719 SUPERFAMILY cAMP-binding domain-like 419 612 IPR018490 -
Cca05g00019 719 Pfam Cyclic nucleotide-binding domain 510 601 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00019 Cca-Chr5 385515 392709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00019 6 718 Ion Channels AT5G53130 78.492 0.0 1147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00019 K05391 - gmx:100801032 1333.93