Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00016 ATGAAGACGCCAAAACGCCACTCGCCGCCGCCCAACGCGGTCCGACGAGTGGAACCCGATTCCGTCGAGATTATCGCGGGGTTCAAGAATTCTCGTCGGAGAAGGCTAAAAATCCGGCGAATGAAGTACACTTGTCAGACAAAGATCCGCGTCGGGAAAGACGCCGACGGCGTTCCTCCGATGGCGGCGGAGGACTCGGAGGGAGAGAGGAGAGAGATTCACGAGCATGTTGAGATATCGCTGTCGCTGGCGTCGTCGTCATCGGAGGAGGAGGAGCGGTCGTCGTCGAAGCAAAAGGACGGCGCTCTGTCGCACGGGTCGGTGTCGTTGATAGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGCGTGGAGATAGGGTTTGTGGCGAAGGAGAGAGGGAAGTGCGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGCTCAGGTGGCGGAGGCGTGCCGGGAGCGGTTGCACCGGCTGGTGGCGGAGGAGGTGGAGAGGAGTGGGAGTCATATGGAATTGGACTGGGACGGAGTTATGCAAGGGTGTTTTCGTAAAATGGACACCGAGGTCGCAGGAAATGCGGCGGTTAGGACGGTGGGTTCCACGGCGCTTGTCGCCGTCGTCGCAGAGGCGCAGATTGTCGTCGCTAATTGCGGTGATTGCAGGGCCGTGATGGGAAGAGGAGGCGAGGCCGTGGACTTGTCTACTGATCATAAGCCCGACAGACCCGATGAGTTGATGCGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCCACCTCGCGATCCATAGGCGATCAGTACCTTAGACCTTATGTAATATCAAAACCAGAAGTGACAATGACCAAACGTAGCAGCAAGGATGAGTTTCTCATACTAGCAAGTGATGGGTTGTGGGATGTGATGTCCAGTGAAGTTGCGTGCCAAGTTGTGAGGAAATGCCTCAACGGGCAGATTAGGAGAGTGTGCAATGGAGTTGAGAATCATCAGAGTCGTTCTGCCGAGGCTGCAGGCCTCTTGGCTGAGATAGCATTGGCAAAGGGAAGCAGAGATAACATCAGTGTCATTGTTGTTGAGTTAAGAGGAACAGTAACATCTGATTGA 1137 0.5594 MKTPKRHSPPPNAVRRVEPDSVEIIAGFKNSRRRRLKIRRMKYTCQTKIRVGKDADGVPPMAAEDSEGERREIHEHVEISLSLASSSSEEEERSSSKQKDGALSHGSVSLIGSRKEMEDAVSVEIGFVAKERGKCDFFAVYDGHGGAQVAEACRERLHRLVAEEVERSGSHMELDWDGVMQGCFRKMDTEVAGNAAVRTVGSTALVAVVAEAQIVVANCGDCRAVMGRGGEAVDLSTDHKPDRPDELMRIEEAGGRVINWNGQRVLGVLATSRSIGDQYLRPYVISKPEVTMTKRSSKDEFLILASDGLWDVMSSEVACQVVRKCLNGQIRRVCNGVENHQSRSAEAAGLLAEIALAKGSRDNISVIVVELRGTVTSD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00016 378 SMART PP2C_4 94 369 IPR001932 -
Cca05g00016 378 MobiDBLite consensus disorder prediction 51 108 - -
Cca05g00016 378 Pfam Protein phosphatase 2C 106 364 IPR001932 -
Cca05g00016 378 PANTHER ALPHABET, ISOFORM E-RELATED 48 376 - -
Cca05g00016 378 ProSiteProfiles PPM-type phosphatase domain profile. 104 371 IPR001932 -
Cca05g00016 378 CDD PP2Cc 104 371 IPR001932 -
Cca05g00016 378 MobiDBLite consensus disorder prediction 63 78 - -
Cca05g00016 378 SUPERFAMILY PP2C-like 102 372 IPR036457 -
Cca05g00016 378 PANTHER PROTEIN PHOSPHATASE 2C 51-RELATED 48 376 - -
Cca05g00016 378 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169
Cca05g00016 378 Gene3D - 97 375 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00016 Cca-Chr5 343095 347116 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00016 93 372 PP2C-type Phosphatase Gene Family AT1G07430 46.505 1.67e-86 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00016 K14497 - gmx:100807235 593.578