Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00013 ATGGAAAATGAAGTCTCTTATGGTTCACGCATTCGTCTATCAATATTTGCTACAATTCTTCTCCAATTCCAATCAAATTGCGTCGCCAAGCAGCACCCACAATGCCCTCCTTCATCGTGCGGCAAAATCGGCAACATATCTTTTCCATTTCGCCTCAGAAGTGACCCAAATCACTGCGGCGACTCAAGGTACGAGTTAGAATGCGCGAACAACGCGACATTGTTAACCTTGTTCTCGGGAAAATATCATGTACACGATATTGATTATAAGAGATACACAATCCTAGTTAGTGATGCGGGTGCAGTAGAGGACACTAATTGCTCCTTCATCCCTCGCTATTTCTTATCCGATAGCAATTTCAGGCCCACGGGCCTGGTTGGCCCAGATGATTTTGGATCAAAGCCGTTCAATTTGGACTTAGATACGTTCAGAATTGGGTACTTCAACTGCGCCAATCCAGTAACCGGCGATCCTCGATATGCTAAGGTGGATACGGGCCGATGTGGGACTCGAGGGCATGTCTATGCTCTTTTGGAACCATCGTATTTGCAGTATCGCGTGCAGGACATCGAGGTTGGGTGTGATCTTATGGTGGCTACCTTGGCGAATTGGAGGAATCTTTCGGAGACCCAAAATGGGAATATTTCGTATGAAGAGATCCATCAGATAATAGTCGAGGGATTTCAGCTTTCGTGGTTGCCTGTTATTTGCGAGAATCGCTGTGGAAAGGGGACCAAGTGTGAGGTTATCAATGAATCCAGTGGAGAAGTCCAGTGTGACAAGCATTTCTGTCATTACGCCTATCATACGACTGATAAGTGCGAGCCTTGGCTGAAGATTTTTGGTTATACTCGAGCTTATCTTAGAGGTGTTATTTTCGGAATAGGAAGCAGAATAACTTTTAGCACAAAACAATTGGATAACCCAGTTGGATTGCAATATTTTGATGGTGGAATTTTCATAGGACGAAATGTGATACCGATATACTTGGTGACCAGATTTCTGTTTGGACTTTTACTTCTCCTTATGTTATTGATCCACAAATGGCGGCGAAGACATTTTTCAATGTATGAAAATATTGAAAATTTCTTGCTAGACAGTCATTTAAAtcccattagatatgaatacaaagaaatcaagaaaatgaccggaggtttcaaagtaaaattaggtcaaggaggctttggctttgtatataaaggaaaacttcgaagtggattggatgtcgccgtaaagatgttgagcaaatccaatgataatgggcaagattttatcaatgaagttgctaccattggaagaatacatcatgtaaatgtggttcgtctcattggatactgtgttgaaagagataagcgtgctatagtttatgaattcatgcctaatggatcgttagataaatacattttttctaatgaaggaagtatctctttaagttatgagaaaatatatgaaatatctctcggaatagcaagtgggattgaatatttgcatcaaggttgtgatatgcaaattctacattttgatatcaagcctcacaatattcttttagatgacaactttgttccaaaggtttcagattttggacttgcaaagttacattctgtaaatgacagcattgtaaatttgactgcagcaagaggaactttgggttatatggctccggaattgttctacaaaaatattggaggagtatcttataaagctgatgtttatagttttggaatgcttttgatggaaatggcgagtaagaggaggaactcaaatcctaatgcaaaacattcaagccaacattactttcccttttggatttatgatcaatttaaagaagagaaaaatattgacatggaagatgtctcaaaagaggacaatgttctagctaaaaagatgttcatggttgcactttggtgtattcagttaaatccaagtaatcgtccttcgatgaataaagtagtggaaatgcttgaaggggagattgaaagtcttgaattgcctgcaaggccttctttttataaaaatgaaACAAATAGACATAATGATGATATCAGTTCTCATCTAACATCATTAAATGATTCCACTGATAGTTATCATGTTGAAAGTATAATTGGTGATTTAATAAAAAGTAACACTTGA 2130 0.238 MENEVSYGSRIRLSIFATILLQFQSNCVAKQHPQCPPSSCGKIGNISFPFRLRSDPNHCGDSRYELECANNATLLTLFSGKYHVHDIDYKRYTILVSDAGAVEDTNCSFIPRYFLSDSNFRPTGLVGPDDFGSKPFNLDLDTFRIGYFNCANPVTGDPRYAKVDTGRCGTRGHVYALLEPSYLQYRVQDIEVGCDLMVATLANWRNLSETQNGNISYEEIHQIIVEGFQLSWLPVICENRCGKGTKCEVINESSGEVQCDKHFCHYAYHTTDKCEPWLKIFGYTRAYLRGVIFGIGSRITFSTKQLDNPVGLQYFDGGIFIGRNVIPIYLVTRFLFGLLLLLMLLIHKWRRRHFSMYENIENFLLDSHLNPIRYEYKEIKKMTGGFKVKLGQGGFGFVYKGKLRSGLDVAVKMLSKSNDNGQDFINEVATIGRIHHVNVVRLIGYCVERDKRAIVYEFMPNGSLDKYIFSNEGSISLSYEKIYEISLGIASGIEYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLHSVNDSIVNLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRRNSNPNAKHSSQHYFPFWIYDQFKEEKNIDMEDVSKEDNVLAKKMFMVALWCIQLNPSNRPSMNKVVEMLEGEIESLELPARPSFYKNETNRHNDDISSHLTSLNDSTDSYHVESIIGDLIKSNT 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00013 709 CDD STKc_IRAK 390 656 - -
Cca05g00013 709 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 686 IPR045874 GO:0004672
Cca05g00013 709 Gene3D Phosphorylase Kinase; domain 1 361 458 - -
Cca05g00013 709 SMART serkin_6 384 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00013 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Cca05g00013 709 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Cca05g00013 709 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Cca05g00013 709 Gene3D Transferase(Phosphotransferase) domain 1 459 666 - -
Cca05g00013 709 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 686 - -
Cca05g00013 709 Pfam Protein tyrosine and serine/threonine kinase 387 654 IPR001245 GO:0004672|GO:0006468
Cca05g00013 709 ProSiteProfiles Protein kinase domain profile. 384 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00013 709 SUPERFAMILY Protein kinase-like (PK-like) 369 655 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00013 Cca-Chr5 299285 307846 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00013 28 670 Receptor kinase-like Gene Family AT5G38260 34.855 6.80e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca05g00013 PK_Tyr_Ser-Thr 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00013 - - gmx:100820366 1149.42