Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00010 ATGCTAAATTTTCAGAAATTGTGTCTTCTATCGGCTGTGGTGTTTTTCCTACGGCATCCTGTTGTAGGCAAGAACCACTGCGCGAATAAATGTGGAAGGGTTCGTATTCAGTTTCCGTTTTATCTCAAAACCAGCAACATGAATCACACCACCGAACACCCACCTGGGTTTGAACTGTCGTGTAACGAAAAAGATGAGACTATGTTGGAGCTTCCTTCTGTTCCAATAAAATTGTTTGTCAGAAACATTGATTACGAGTCTCAGCGAATTGAAATATATGAGCCGCAAAATTGCCTTTCCGCTCAGCTCTTGAAACTCGGCAACGCATCCATTTCTCCATTCCAATTTCCCAAGCCATATTATGGTTCTGACGGGACTAACGTTTCCTCCTTCAATTGCGATTCAATGTCGTGCCCTATTTTGCTAAGTGAATCCTCCTTGGACTCTGTTCAACCTGAATTAGTATCTTGCACCAAGGTGAAAGATGTTTTGTCTGCCAAATGGTATAATTCGTATTCCTACAATGACGGGTCGGTGGCTATGGAATGGTTGAAACCTGATTGTAGATACTGTGAAGCACGAGGCCAGAAATGTAAACGGAAGAATGGAACCAGCGGTGAAACTGAATGTTCCGTTTGTCTAACAAATACCACTCATGGGTTAACAAATGTTTTACTCATTGCCGCAGGAGGAATAATGGGTTTGATGCTACTAGTCGTGGCATTGGTTTGCGTGTATCGCTATTATGCGAAGAAAGAGGAAGACCAAGCTCGGATAGAGAAATTCTTGGAGGATTATAGGGCACTGAGGCCTACGACTacgagactctcttatacagacgttaagagaatcacaaatggatttagtgaaagtttagGCAGAGACGTGCAAATTAATGTTGAAGATGAGGGGGATGTTAACATTGCAAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCAGTGAATCGTCCTTCAATAAAAATTGTGGTACAAATGCTTGAAGGGGATGGAGAGGAGTTAATTGAACCTCCAACTCCTTTTTCTAGAACAAACATTGTACCAGCAACACATCAAAATTTTGAGTTGGAAGTTATCCATGAAATAGAAGAGTAA 1125 0.3982 MLNFQKLCLLSAVVFFLRHPVVGKNHCANKCGRVRIQFPFYLKTSNMNHTTEHPPGFELSCNEKDETMLELPSVPIKLFVRNIDYESQRIEIYEPQNCLSAQLLKLGNASISPFQFPKPYYGSDGTNVSSFNCDSMSCPILLSESSLDSVQPELVSCTKVKDVLSAKWYNSYSYNDGSVAMEWLKPDCRYCEARGQKCKRKNGTSGETECSVCLTNTTHGLTNVLLIAAGGIMGLMLLVVALVCVYRYYAKKEEDQARIEKFLEDYRALRPTTTRLSYTDVKRITNGFSESLGRDVQINVEDEGDVNIAKKLAIVGLWCIQWNPVNRPSIKIVVQMLEGDGEELIEPPTPFSRTNIVPATHQNFELEVIHEIEE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00010 374 Pfam Wall-associated receptor kinase galacturonan-binding 27 93 IPR025287 GO:0030247
Cca05g00010 374 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 298 373 - -
Cca05g00010 374 PANTHER RUST RESISTANCE KINASE LR10-RELATED 298 373 IPR045874 GO:0004672
Cca05g00010 374 PANTHER RUST RESISTANCE KINASE LR10-RELATED 43 294 IPR045874 GO:0004672
Cca05g00010 374 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 43 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00010 Cca-Chr5 274073 275945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00010 28 210 C3H Transcription Factor Family AT2G46495 31.683 2.12e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00010 - - gmx:100816669 352.443