Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00009 ATGATGTGGGAGTTTGTATTTCCTAAGGGTGGGTGCCGTGTAAAGGTTGCTACTTTTGCAAACTGGACCTCCGAAAAGAACGTTTCCTATGGTGATATACGTGAGTGGTTGCACAACGGATTTTGGTTGTCTTGGTTGTCACCAGTTACTTGCAGGGATAATTGCGGAAGAGCTTCCTCATGCTCTCTCAATGAAACCACAGAACAAGTTCAATGTGATGAAGTTTTTGTTCCGTGCTATATATTCGAAGATAAACTCGTCAAGTGCGCAATTCAATCACGAATTCTCGGATATATAAAAGGTTATCTCATTGGTGTTATAAATGGATTAGTTAAAAGAATAACATTTCGCACAAAACTTACTGCTTGGGAAGCTAACGAAGATTTAATAGGACAATATGTTTTACCAATATTTTTGGTAGCCAGATGTCTTTTTGGAGTTTCACTTTTGCTTATGTTATATATCTATATGTGGCGACGAAGACATGTTTCAATGTATGAAAACATTGAAATGTTTTTATTAGACAACAATCTAAAtcccattaggtacgaatataaagaaatcaagaaaatgactgaaggtttcaaagtgatattgggtcaaggaggtttcggctttgtatacaaaggaaagcttcaaagtgggtcacatgtagcaataaaaatgttgaacaaatccgaaactaatggacaagactttattagtgaagtggctactattggaagaatacatcacatgaatgtggtacgtcttattggatattgtgttgaagggaaaaaacgtgctctagtttatgaatacatgccaaatgggtcattagataaatacattttttctaaagaaggaagtgttcctttaagttacaagaaaacttatgaaatatctcttggagtagctcatgggattgcatattttcatcaaggttgtgatgtacaaattcttcattttgacatcaaacctcataatattcttctagatgataacttgattccaaaggtttcagattttggacttgcaaagttatatcatatgaaagatagatctattgttttaactggtgcaagaggaactttgggttacatggctcccgaattattctaccaaaatattggtaaaatatcttataaagctgatgtgtatagttttggaatgcttttgatggaaatgggaagtagaagaaggaactcaaatcctcatgcagaccattcaagccaacattacttcccattttggatctatgatcaatttaaagaagaaaatgacattgacatggaggatgcctcagaagaggataaaattctagtgaaaaagatgtttatagttgcactttggtgtatacaattgaaaccaagtgatcgtccatcaatgaagaaggttgtagagatgcttgaaggaaaatttgaaagtcttgaaatgcctccaaagcctattttctATCCCCATGAAGATTTTGGACATGATAGTGGAATCATCTCTGACCAAACATCATGGAGTGGTTCCACTAGTTATAACAATAATCTTAGCAAAATTGAGTATGGAGAACAATGA 1548 0.1531 MMWEFVFPKGGCRVKVATFANWTSEKNVSYGDIREWLHNGFWLSWLSPVTCRDNCGRASSCSLNETTEQVQCDEVFVPCYIFEDKLVKCAIQSRILGYIKGYLIGVINGLVKRITFRTKLTAWEANEDLIGQYVLPIFLVARCLFGVSLLLMLYIYMWRRRHVSMYENIEMFLLDNNLNPIRYEYKEIKKMTEGFKVILGQGGFGFVYKGKLQSGSHVAIKMLNKSETNGQDFISEVATIGRIHHMNVVRLIGYCVEGKKRALVYEYMPNGSLDKYIFSKEGSVPLSYKKTYEISLGVAHGIAYFHQGCDVQILHFDIKPHNILLDDNLIPKVSDFGLAKLYHMKDRSIVLTGARGTLGYMAPELFYQNIGKISYKADVYSFGMLLMEMGSRRRNSNPHADHSSQHYFPFWIYDQFKEENDIDMEDASEEDKILVKKMFIVALWCIQLKPSDRPSMKKVVEMLEGKFESLEMPPKPIFYPHEDFGHDSGIISDQTSWSGSTSYNNNLSKIEYGEQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00009 515 Gene3D Phosphorylase Kinase; domain 1 172 267 - -
Cca05g00009 515 ProSitePatterns Protein kinases ATP-binding region signature. 199 221 IPR017441 GO:0005524
Cca05g00009 515 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 493 IPR045874 GO:0004672
Cca05g00009 515 SMART serkin_6 193 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00009 515 ProSiteProfiles Protein kinase domain profile. 193 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00009 515 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 9 493 - -
Cca05g00009 515 CDD STKc_IRAK 199 465 - -
Cca05g00009 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Cca05g00009 515 Pfam Protein kinase domain 197 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00009 515 SUPERFAMILY Protein kinase-like (PK-like) 179 464 IPR011009 -
Cca05g00009 515 Gene3D Transferase(Phosphotransferase) domain 1 268 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00009 Cca-Chr5 254064 264382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00009 182 496 Receptor kinase-like Gene Family AT5G38280 48.438 1.35e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca05g00009 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00009 - - gmx:100170745 739.184