Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00007 ATGATAATCAAGCGGAACCTGAAATCCGAAATGCCGAGTTTGAAACGGCGGCGACTCGGCCACGCGGGAAGCGAGGACAACGAGTGCGCCGCCGCGGAGAGGAAGAAGAGGAGGAAGACGAATGGGCACTGCTACCCTCTGAATCTCCTCGCTGGCGTAATTCCGGCGAGTTTTTGCGGGCTGCTGGGGGCGTCGGTGAAAGCTAGCGCGGCGGCGCTGAGCGCAAACGACGGCGGCGGCAAGAAGAAGGCTTCACGCCCGGCGCTGGTGCGGACTTCGCGGGGCCGGGTGCAGGCGCTGCCATCGCGGTTCAACGATTCGGTAATTGAGGATTGGAGGAAGGAAAGCAAGGTTGAATGTGAATTGGATGAGGAATTTGAGAGTGTGAAGAAATCGAGAAAAGGGAAGAGCAATAAGGCTCGAGGGTATTCTGCATTGTGTGAGGAGGTGCTGCATAAGAATTTTGATGCTGCCAGCAAGGGATTGGGGGAATTGTGGGGCAACGAGGGCGTTTTGAAGGAGGAGAAGAAAGAGGGATTGTATGGACCAGAAGACTTTTATGCTGGGGATATAGTGTGGGCCAAGGCAGGGTGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTATGTGTCAGGCTCCCGAGTTGGTTTTGAAGTCGTGTATTCCTGATGCTGCTTGTGTCATGTTTCTTGGGTACGCTGGGAGTGAAAATCAAAGGGACTATGCCTGGGTGAAATATGGGATGATTTTTCCGTTTGTTGATCATGTAGACAGGTTTCAGGGGCAGTCTGAATTGGGGTGCTATACTCCCTCTGAATTTCAAATGGCAATAGAGGAGGCAGTTTTGGCAGATCAGGGCTTTAGAGAGAAGTTAATAGCAGATATAAATACAGCAGCTAATAACACTGGTTATGGTGATTCTATACGGAAAGGCATTCAAGAGATCACTGCTTCAAACCGGAATGCAGCATGTCACTCTCTGAACCAGGATTTATTTGATAACAAGAAAGACACTCGAGCTTGTGAAGTATGTGGATTGGAGCTTCCGTTCAAAATGTCAAAGAAAACAAAGGATTTGACTCCTGGCAGCCAATTCTTATGTAAAGCATGTGCTATGGTGTGCTGCGATGGATGTAGAGTATGGGTGCATGCAGAATGTGACAAAGTTTCCAACAACCTTTTCAAGAATCTTGGAGGTTCTGATAATTTGTGTCCTACATGCAAAATGAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAATGGAAAAAAAATGGTGGGCAGCTAGTGCTTCCTAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTGCACTTAGTTGTGTGCAAGTGTGGGTTTTGCAAGACTAAAAAACATACACTTAGAGAATGGGAACGACACACAGGTTCCAAATTTAGAAATTGGAGGACAAGTGTTCAGGTGAAAGGATCCATGCTATCACTGGAAAAATGGATGCTGCAATTGGCTGAGTTTCATGCTAATGCTGTAGTTTCTGTTAAACCTAAAAAACCATCCTTAAAAGAAAAGAAGCAGAAGTTGTTTACCTTTCTACAAGAGAAGTATGAGCCTGTTTGTGCCAAGTGGACTACAGAACGATGTGCTATATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCCGTTCATCAGGAATGCTATGGAGCAAGAAATGTTCAAGACTTAACGACATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACCGATATTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCTTTGGGTATTCTAAGCATTCCATCAAATTCTTTTGTTAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGTTCCACGTATTTTCATGCCATGTGCGCATCAAGGGCCGGCTACCGCATGGAGTTACATTGTATGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGAGCTCCCAATCCTGACACTGTTTTGATAATGCAAACCCCTCTTGGGGTCATTTCTACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGGTCCAGGTTAATTTCATCTAAAAGAATAAAGGTTGAAGACATTTCTACTGCAGAGAACACTAGACATGAGCCATTTTCTGCTGCTCGGTGTCGTATCTTTCAAAGAACAAATCATACGAAGAAGAGAGCAGCAGATGAAGCTGTTGCTCATCATGTGAGGGGTCACTGCCATCATCCTTTAGATGCAATACGGAGTTTAAATGCATACAGAGTGGTTGACAAGCCTCCAGCATTTTCTTCTTTCAGGGAGCGCCTTTATCATTTACAGAGAACCGAAAATGAACGAGTTTGCTTTGGTAGATCTGGCATCCATGGATGGGGCCTCTTTGCAAGTCGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGGCGCAGTGTTGCAGATCTTAGGGAGGCACGCTATAGGTTAGAAGGGAAAGACTGCTATCTTTTCAAAATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCACGGTTAATTAACCATTCTTGTATGCCCAATTGCTATGCAAGGATCATGAGTGTGGGTGATGATGAGAGCCGGATTGCTCTAATTGCTAAGACAGATGTCTCTGCTGGTGATGAGTTGACGTATGACTACTTGTTTGATCCCAATGAGCCGGATGAATTTAAAGTCCCTTGTTTATGTAAAGCACCAAACTGCCGGAAATTCATGAATTAG 2958 0.4425 MIIKRNLKSEMPSLKRRRLGHAGSEDNECAAAERKKRRKTNGHCYPLNLLAGVIPASFCGLLGASVKASAAALSANDGGGKKKASRPALVRTSRGRVQALPSRFNDSVIEDWRKESKVECELDEEFESVKKSRKGKSNKARGYSALCEEVLHKNFDAASKGLGELWGNEGVLKEEKKEGLYGPEDFYAGDIVWAKAGWKEPFWPAIVIDPMCQAPELVLKSCIPDAACVMFLGYAGSENQRDYAWVKYGMIFPFVDHVDRFQGQSELGCYTPSEFQMAIEEAVLADQGFREKLIADINTAANNTGYGDSIRKGIQEITASNRNAACHSLNQDLFDNKKDTRACEVCGLELPFKMSKKTKDLTPGSQFLCKACAMVCCDGCRVWVHAECDKVSNNLFKNLGGSDNLCPTCKMKFDFELSDSEKSQPKVKWKKNGGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCKTKKHTLREWERHTGSKFRNWRTSVQVKGSMLSLEKWMLQLAEFHANAVVSVKPKKPSLKEKKQKLFTFLQEKYEPVCAKWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDLTTWVCKACETPDIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCMEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSKRIKVEDISTAENTRHEPFSAARCRIFQRTNHTKKRAADEAVAHHVRGHCHHPLDAIRSLNAYRVVDKPPAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFASRNIQEGEMVLEYRGEQVRRSVADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVSAGDELTYDYLFDPNEPDEFKVPCLCKAPNCRKFMN 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00007 985 ProSiteProfiles Zinc finger PHD-type profile. 550 601 IPR019787 -
Cca05g00007 985 CDD ePHD_ATX3_4_5_like 607 718 IPR041955 -
Cca05g00007 985 ProSiteProfiles Post-SET domain profile. 969 985 IPR003616 -
Cca05g00007 985 CDD SET_SETD1-like 830 981 - -
Cca05g00007 985 ProSiteProfiles PWWP domain profile. 188 257 IPR000313 -
Cca05g00007 985 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00007 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 403 IPR013083 -
Cca05g00007 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 721 IPR013083 -
Cca05g00007 985 Gene3D - 183 291 - -
Cca05g00007 985 PANTHER PHD FINGER PROTEINS 1 985 - -
Cca05g00007 985 SMART PHD_3 342 410 IPR001965 -
Cca05g00007 985 SMART PHD_3 663 719 IPR001965 -
Cca05g00007 985 SMART PHD_3 552 599 IPR001965 -
Cca05g00007 985 SUPERFAMILY FYVE/PHD zinc finger 551 615 IPR011011 -
Cca05g00007 985 CDD PHD_ATX3_4_5_like 552 598 IPR042011 -
Cca05g00007 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 545 601 IPR013083 -
Cca05g00007 985 ProSiteProfiles SET domain profile. 843 960 IPR001214 GO:0005515
Cca05g00007 985 SUPERFAMILY FYVE/PHD zinc finger 359 413 IPR011011 -
Cca05g00007 985 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 985 IPR025780 -
Cca05g00007 985 SUPERFAMILY SET domain 833 985 IPR046341 -
Cca05g00007 985 SMART set_7 843 966 IPR001214 GO:0005515
Cca05g00007 985 ProSitePatterns Zinc finger PHD-type signature. 553 598 IPR019786 -
Cca05g00007 985 SUPERFAMILY Tudor/PWWP/MBT 181 287 - -
Cca05g00007 985 Gene3D SET domain 738 985 IPR046341 -
Cca05g00007 985 SMART PostSET_3 969 985 IPR003616 -
Cca05g00007 985 Pfam PHD-zinc-finger like domain 606 718 - -
Cca05g00007 985 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 985 - -
Cca05g00007 985 Pfam PWWP domain 189 282 IPR000313 -
Cca05g00007 985 Pfam SET domain 854 959 IPR001214 GO:0005515
Cca05g00007 985 ProSiteProfiles Extended PHD (ePHD) domain profile. 604 719 IPR034732 -
Cca05g00007 985 Pfam PHD-finger 565 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00007 Cca-Chr5 183307 195499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00007 553 718 C2H2 Transcription Factor Family AT3G14740 32.759 2.23e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca05g00007 zf-HC5HC2H_2 2.5e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00007 - - gmx:100775276 1717.21