Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00006 ATGTTTGCAGAGGCAGGACTTCTCTTCCCATATTTTCGAAATTTCACTCAAGAGTTTCAACAACTTGAGGAGTACTGCATGACCCAGAAGTCCAATGCTTCAATGAATGACCTTGTTCAATCTTCTTCTATAATCTCAGAATATGATTTGTTAATAGAGGGAGATCTGTTCAAAGCACCTGAACCTGTAATTGAAGAACCAGCCATGGACCTTGATCCTGTTCAAGCAGCCATTTCAATGATATCTTGTGGGGATGATGTCTCCTCACAAGGTCTAAAATCATCTGATATTGATGTACTTCAAAATGAACAGCTTCTGAGTGAGGTATTCTATGAGTGCAAAAAGGATCTCTTAGAAAAGACAGTGATAGAGTCACCAGTCTCTGATATTATGGAAATCAAGGTTCCAGCTTTGAACATCGAGGAGAATTCAATTCCTGAAAACAAACCACTTCCTGACATGACTCTACCAAAGAGTATCAGTTCGGGAAGTCTGAGTTCAATGGACTGGATGCATGGAGCTGCGATGAAGCCTGCATTCCTAGATTTCCCCGGAATAGATTTCAATGCAGTTTATGGCATGCGGAGAGCATTTAGTGAAGGAGATATAAAGACTCTCAGTAATGGCAACACAAACATTGGCCAATCTCCCCGGGAAAGGACTTTTCTTCCCAGCAACTGCACTAGTGAGGAACGTCAAGAAAAGCTCTCCAGATACAGGAATAAAAAGACAAAGAGAAATTTTGGCAGGAAAATTAAGTATGCTTGCAGGAAGGCACTAGCAGATAGCCAACCAAGAATCCGTGGAAGATTTGCAAAGACTGAAGAATTAGATGTCAAGAGGCAATGA 849 0.4111 MFAEAGLLFPYFRNFTQEFQQLEEYCMTQKSNASMNDLVQSSSIISEYDLLIEGDLFKAPEPVIEEPAMDLDPVQAAISMISCGDDVSSQGLKSSDIDVLQNEQLLSEVFYECKKDLLEKTVIESPVSDIMEIKVPALNIEENSIPENKPLPDMTLPKSISSGSLSSMDWMHGAAMKPAFLDFPGIDFNAVYGMRRAFSEGDIKTLSNGNTNIGQSPRERTFLPSNCTSEERQEKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEELDVKRQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00006 282 Pfam CCT motif 232 274 IPR010402 GO:0005515
Cca05g00006 282 PANTHER CCT MOTIF FAMILY PROTEIN 26 280 - -
Cca05g00006 282 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Cca05g00006 282 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00006 Cca-Chr5 162408 166504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00006 199 273 C2C2-CO-like Transcription Factor Family AT5G24930 41.333 3.07e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g00006 CCT 1.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00006 - - gmx:100814332 436.032