Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01973 ATGTCGCTGAATATGAAAACCCTAACCCAAGCATTGGCGAAGACCGCGGCGGTGATCGAGAAGACAGTGCAGACGACGGTGCAGGAGGTGACGGGCCCGAGGGCACTTCAGGAATACGAGCTGCTCCAACAGATCGGGTCCGCCGGGCCCGGGCTCGCCTGGAGGCTGTACTCGGGCAGGGCCCGTGATCCCTCGCGGCAGCACCAATACCCCGTCGTGTGCGTGTGGGTGCTGGACAAGCGCCCTCTTTCCGAGGCCCGAATGCGCGCGGGCCTCACCAAGGCCGCCGAGGATTCCTTCTTAGATTTGATTCGCACCGACGCCGCCAAGCTCGTGCGCCTCAGGCATCCCGGTGTCGTTCACGTTGTCCAGGCCCTCGACGAGAGCAAGCACGCGATGGCAATGGTCACCGAACCCTTGTTCGCTTCCGCCGCTAATACTCTTGGCATTGTTGACAATATTCCTCATCTTCCCAAAGATCTCAGGGGAATGGAAATGGGTCTGTTGGAGGTGAAGCATGGCTTACTTCAGATAGCAGAATCCCTCGACTTTCTCCACAACCATGCTCATCTTATTCATCGAGCTATATCACCTGAGAACATTCTTATTACCCTGAGTGGAGCCTGGAAACTTGCTGGATTTGGTTTTGCAATTTCTAGTCAGACCCCTGGTGACTCATCTAATCTGCAACCCTTCCATTATTCTGAATATGATGTTGAGGACTCTGTCTTGCCACTTCAGCCATCACTTAATTACACTGCTCCTGAGTTGGTGAGGAGCACTGCATCTTCAGCTGGGTGCTCATCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTAATTGCCCGGAAGCCTTTGTTTGACTGCCACAACAATGTGAAAATGTACATGAATACCTTGACTTACTTATCCAGTGACGCATTCTCATCTATCCCACCAGAGCTAGTTCCTGACTTGCAAAGAATGCTTTCATCAAGTGAAACTTCTAGGCCAACAGCAATGGATTTTACAGGCTCACCATTTTTTCGGCAAGACACTAGGTTGCGTGCTCTACGCTTTCTCGACCACATGCTTGCAAGAGATAACATGCAGAAATCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAGGATTTTGATTCCCGTGTATTGCGATACAAGGTCCTTCCACCACTTTGTGCTGAACTTAGGAATGTGGTGATTCAGCCGATGATTTTACCGATGGTTCTAACCATTGCAGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTTCCAGCCCTTGTTCCTGTCTTGAGTACTGCTGCTGGTGAGACACTGTTACTACTTGTGAAGCATGCTGAGCTTATAATAAACAAGACCAGTCAAGAGCATTTAGTTTCACATGTTCTTCCAATGATTGTGCGGGCCTATGATGATAATGATGCTCGTATGCAAGAAGAGGTCCTGAAAAAATCTGTATCTCTTGCCAAACAACTAGATGCCCAGCTGGTGAAACAAGTGGTTTTGCCCCGTGTTCATGGATTGGCACTTAAAACAACAGTTGCGGCGGTTAGAGTCAATGCATTGCTGTGCCTAGGAGACATGGTTAACCGGCTTGATAAACTTGCTGTCTTGGACATCTTGCAAACTATTCAACGCTGTACTGCCGTTGACCGTTCCCCTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGTATGGAGTAGAATTTGTAGCTGAACATGTTCTGCCATTGCTGATGCCCCTCCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCACAAAATAGAAGAGAAGCGAGGAGTGGTAGTGACTGATTCTGGAATGCCAGAGGTAAAAGTATCTCCCATGGTTAATGCCAATGGCCTTCAATCTGAAGCCCTGCGAACAAGCAGCAGCACTGTACCTGCTTCAGCAAAAAGCAGCTCCTCCTGGGATGAAGATTGGGGTCCCAAAACCAAGGGCACTGCCTCTTCTGTCCAGAATGCTATTGATACAACCGATCAATCTATGGCAGGCAGCCCTTTGGGTCAAGTAAAGCATTTGTCCTTATCTTCTTTATCTGCTCAGCAGACAACCAAGTCATGTCCCTCAGTAGATGTAGAATGGCCACCTCGTGCTTCTTCTGGTGTTACCCCACAATTTGGTGAAAATGAAAGGCAGACAATAGCCTCAGGAACTTCATCCACATCCTTTCTCGAACATGATGATCCTTTTGCTGATTGGCCTCCGCGTCCCAATGGCTCAGTATCAGGTGGATCTGGAATATCCAGCAATGGTAATTTAGGAATGCCACTAAACAAAGTTGGGTTTAATTCAATGACAAGCACTTCAAGCAATATGGGTGCCCAAACTAGTAACAGTTGGCCTGTTAATTCCCAAAGTTCTGCCGATTCCATTAGTTTGAACTCAAGGAATGCTAGTTCAACCATGGGTAGCCTGAATAGTGGCCTTGGACCTCAGAATTCTCTTGACTTCCTAAAACAAAGCCATGCTTTTCCAGTATCGAATGCTTCATATAATAATGTTCAGTCAACAGCAACAGATATTGGATCAATATTTTCTTCCAACAAGAATGAACAGATTGCGCCTAAACTTGCACCACCCCCTTCCACCACagtgggcagaggacgagggagagggaggggagCTAGTTCAACCACTCGGTCCTCTCATACCAAGTCACACGGTGAGCAGCCACCCCTTTTGGATTTGTTGGGGTAG 2781 0.4685 MSLNMKTLTQALAKTAAVIEKTVQTTVQEVTGPRALQEYELLQQIGSAGPGLAWRLYSGRARDPSRQHQYPVVCVWVLDKRPLSEARMRAGLTKAAEDSFLDLIRTDAAKLVRLRHPGVVHVVQALDESKHAMAMVTEPLFASAANTLGIVDNIPHLPKDLRGMEMGLLEVKHGLLQIAESLDFLHNHAHLIHRAISPENILITLSGAWKLAGFGFAISSQTPGDSSNLQPFHYSEYDVEDSVLPLQPSLNYTAPELVRSTASSAGCSSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNTLTYLSSDAFSSIPPELVPDLQRMLSSSETSRPTAMDFTGSPFFRQDTRLRALRFLDHMLARDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLSTAAGETLLLLVKHAELIINKTSQEHLVSHVLPMIVRAYDDNDARMQEEVLKKSVSLAKQLDAQLVKQVVLPRVHGLALKTTVAAVRVNALLCLGDMVNRLDKLAVLDILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDMLHKIEEKRGVVVTDSGMPEVKVSPMVNANGLQSEALRTSSSTVPASAKSSSSWDEDWGPKTKGTASSVQNAIDTTDQSMAGSPLGQVKHLSLSSLSAQQTTKSCPSVDVEWPPRASSGVTPQFGENERQTIASGTSSTSFLEHDDPFADWPPRPNGSVSGGSGISSNGNLGMPLNKVGFNSMTSTSSNMGAQTSNSWPVNSQSSADSISLNSRNASSTMGSLNSGLGPQNSLDFLKQSHAFPVSNASYNNVQSTATDIGSIFSSNKNEQIAPKLAPPPSTTVGRGRGRGRGASSTTRSSHTKSHGEQPPLLDLLG 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01973 926 MobiDBLite consensus disorder prediction 769 835 - -
Cca04g01973 926 SUPERFAMILY ARM repeat 310 607 IPR016024 -
Cca04g01973 926 MobiDBLite consensus disorder prediction 760 835 - -
Cca04g01973 926 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 925 - -
Cca04g01973 926 Gene3D Transferase(Phosphotransferase) domain 1 160 346 - -
Cca04g01973 926 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 925 - -
Cca04g01973 926 SUPERFAMILY Protein kinase-like (PK-like) 34 347 IPR011009 -
Cca04g01973 926 MobiDBLite consensus disorder prediction 645 678 - -
Cca04g01973 926 CDD PK_SCY1_like 45 344 - -
Cca04g01973 926 MobiDBLite consensus disorder prediction 878 926 - -
Cca04g01973 926 Gene3D - 347 620 IPR011989 -
Cca04g01973 926 ProSiteProfiles Protein kinase domain profile. 39 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01973 926 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Cca04g01973 926 MobiDBLite consensus disorder prediction 902 916 - -
Cca04g01973 926 MobiDBLite consensus disorder prediction 709 739 - -
Cca04g01973 926 Pfam Protein kinase domain 104 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01973 926 SMART serkin_6 39 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01973 171 301 MAP Kinase Gene Family AT1G59580 30.597 2.42e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Cca04g01973 Pkinase 2.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01973 K17541 - gmx:100796211 1587.01