Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01967 ATGGAGGAATCAGTTGCGATTTTAACTGACTCTGATTCTGTTGTGCAGGAAAAGCTGGTTCTGTCATCAGATGAAGTGATAGAGAATGGTTTGCGGAGATTTGGGTGGTCAGAGATGGTGCAATGCATCCTTGTGTCCAGTGCCATGTACTTTGATGCACAGCAATCCTTCATAGCCATCTACTCTGACGACTACCCAACTTGGCACTGCACCGATCCCACCACGTGCACCTCTTATTCTAATATCTGCAAGCTCCCAAAGTCTTCTTGGGCTTGGGATGGACCCTCTTCTAAGACAATCGTATCCCAGTTTGGCCTTCAATGTGCCAGCAGCTTCATCACAGGTTTACCTCAGTCTTCTTTCTTCATGGGTTGCCTTGTTGGTTCCTTTCTTCTTGCCACCTTGGCTGACACATCTCTTGGAAGAAAGAACCTCCTCGTTCTGTCGAGTTTATCAATGTCCATATCTTCTGTGATCATTGTCTTCTCCACCAATGTTTGGGTCTACTCAGCTTTTAAATTCCTCATTGGGTTTTGGCGTTCATCCATTGGAACATGTGTTCTCGTGTTGCTGACCGAGAAAGTGAGCACAGAGTGGAGGTTCACGGTGGGGATTCTTGAGTATTTCTGCTTCACTTTGGGGTATATGGTCTTGCCTGGAATAGCTTATCTAAACAGAAATTCCTCATGGAAATCTCTTTACTTGTGGACATCCATGCCTGCTATTTGTTACTCTGTCATTGCCTACCTTTTTGTTACTGAGTCTCCAAGGTGGCTTCTCATGCAAGGCCGAGAGCAAGAAGCCATGGCAATGCTTAAAGGAGTTTCTTCGGTAGAGAATGGTTCTGATTTAACTGCAACCCTACTAAAAGTTCCTCCTAAACAAAAGTCCTCATTTTTTCAACTTTACTCATCAATAGCAGAGTTGTTTGAGAGACGTTGGGCTCTTAAACGGATGTTGGCAATTATGGTGCTTGGTGTTGGGATTGGAATGGTGTATTTTGGCATGCCTTTGGCTGTGGGGAACTTGGGATTTGACATTTACTTGGCTGTTGTGTTCAATGCCTTGATGGAAATACCCTCTTGTGTAGCCACCTACTTCTTGGAAAACTACAGAAGAAAGCCATCTATTCTTGCATTCTCAGTAGCAAGTGGGATATGTTGTATATTGTGCGTGGTTGTAGGCAGAGGGCTGCAAGTGGCTAAGGTGGGACTGTCATTGGTAGCATTTTTTTGTAATGTCACAGCTTATAATGTGTTTCTCATTTACATTATAGAGCTGTTTCCCACGAGTGTAAGGAACACTACAACCTCGTTGGTGAGGCAAGCCACTGTATTTGGCAGCATATTCAGCCCGTTTTTTATAGCTGCGGGGAGGAAAAATGATGTTTTCTCTTATGGCGTGTTTGGAGTAGTTATAATGTCATCCTGTTTGACATTGGTTTGTTTGCCAGAGACCATAGGGGTAGCTCTTTGTGATACCATGGATCAACAAGAGAAAAAGGACACCATATCTGCGTAA 1521 0.4392 MEESVAILTDSDSVVQEKLVLSSDEVIENGLRRFGWSEMVQCILVSSAMYFDAQQSFIAIYSDDYPTWHCTDPTTCTSYSNICKLPKSSWAWDGPSSKTIVSQFGLQCASSFITGLPQSSFFMGCLVGSFLLATLADTSLGRKNLLVLSSLSMSISSVIIVFSTNVWVYSAFKFLIGFWRSSIGTCVLVLLTEKVSTEWRFTVGILEYFCFTLGYMVLPGIAYLNRNSSWKSLYLWTSMPAICYSVIAYLFVTESPRWLLMQGREQEAMAMLKGVSSVENGSDLTATLLKVPPKQKSSFFQLYSSIAELFERRWALKRMLAIMVLGVGIGMVYFGMPLAVGNLGFDIYLAVVFNALMEIPSCVATYFLENYRRKPSILAFSVASGICCILCVVVGRGLQVAKVGLSLVAFFCNVTAYNVFLIYIIELFPTSVRNTTTSLVRQATVFGSIFSPFFIAAGRKNDVFSYGVFGVVIMSSCLTLVCLPETIGVALCDTMDQQEKKDTISA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01967 506 Pfam Sugar (and other) transporter 94 491 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca04g01967 506 Gene3D MFS general substrate transporter like domains 42 501 IPR036259 -
Cca04g01967 506 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 487 IPR020846 GO:0022857
Cca04g01967 506 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 14 503 - -
Cca04g01967 506 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 14 503 - -
Cca04g01967 506 SUPERFAMILY MFS general substrate transporter 99 489 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01967 Cca-Chr4 38280286 38282122 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01967 2 505 Organic Solute Cotransporters AT1G79360 46.065 1.86e-167 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01967 - - gmx:100819053 858.596