Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01966 ATGCAGAACGAGGAAGGACAAATCACCGAGCTTTACATTCCCAGGAAGTGCTCTGCAACAAACAGATTGATCACTGCAAAGGACCATGCTTCGGTCCAGATCAACATTGGGCATTTGGATGAGAATGGTGTCTACAATGGTCAATTTTCCACTTTTGCCCTCTGTGGCTTCATCCGTGCTCAGGGTGATGCCGACAGTGCTCTAGATCGTTTGTGGCAGAAGAAGAAAGTTGAAGCTAAGCAACAGTAG 249 0.4699 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDENGVYNGQFSTFALCGFIRAQGDADSALDRLWQKKKVEAKQQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01966 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Cca04g01966 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Cca04g01966 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Cca04g01966 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Cca04g01966 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Cca04g01966 82 Gene3D - 1 82 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01966 Cca-Chr4 38264958 38266381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01966 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 87.654 1.43e-53 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01966 K02971 - gmx:100817753 164.851