Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01964 | aTGTCGGAAGGGTATCCGTGTTCGTGTTGGGAGTCAGAAGCTTCGTGTGGGTGTAGATCTGAGGCCTCAGGCACAGCTGAACTGAAGCTGTACAGAGCCTTCATCTTCTGCGTTCCAATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTCTACCTCCGACCCCGAAGGCTCCATTGGGTCACACTCACACACAACCACAATGCCAATGCCATCTCCACTGGCTTGCACAAAGATCTCAGGGAGATGCTCCCCGTTATTGTCTTCAAGGAAAGCTTCTCTGTCAAAGATACTCAATGCTCAGTGTGCCTTTTGGAGTACCAAGCAGAGGATAGGCTGCAACAGATACCTGCATGTGGCCATACGTTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCCTACTAACCACTGCTAAATCTTCAACACAGACACCATATATACAGCCACAGAGCAATGAAGAAACACAAGCCATGGCGTTCTCTGAGTCTAGATCTACTAGGCAACTTGAAACCACTGTCCATCAAAATGTCTCTGGAGAAGTTTCTATCAGTGTTCAATGCACTGATGTTGAAGGGCAAAATGTGCGAAACGATGAATAA | 639 | 0.4789 | MSEGYPCSCWESEASCGCRSEASGTAELKLYRAFIFCVPIFFTLILLFLFYLFYLRPRRLHWVTLTHNHNANAISTGLHKDLREMLPVIVFKESFSVKDTQCSVCLLEYQAEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTTAKSSTQTPYIQPQSNEETQAMAFSESRSTRQLETTVHQNVSGEVSISVQCTDVEGQNVRNDE | 212 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01964 | 212 | PANTHER | RING-H2 FINGER PROTEIN ATL7-LIKE | 4 | 191 | - | - | |
Cca04g01964 | 212 | CDD | RING-H2_EL5_like | 101 | 144 | - | - | |
Cca04g01964 | 212 | Pfam | Ring finger domain | 101 | 144 | IPR001841 | - | |
Cca04g01964 | 212 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 149 | IPR013083 | - | |
Cca04g01964 | 212 | SUPERFAMILY | RING/U-box | 86 | 150 | - | - | |
Cca04g01964 | 212 | ProSiteProfiles | Zinc finger RING-type profile. | 102 | 144 | IPR001841 | - | |
Cca04g01964 | 212 | SMART | ring_2 | 102 | 143 | IPR001841 | - | |
Cca04g01964 | 212 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 4 | 191 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01964 | Cca-Chr4 | 38239921 | 38244291 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01964 | 20 | 200 | C3H Transcription Factor Family | AT4G10150 | 42.254 | 5.04e-55 | 173 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01964 | K19039 | - | gmx:100794211 | 291.582 |