Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01964 aTGTCGGAAGGGTATCCGTGTTCGTGTTGGGAGTCAGAAGCTTCGTGTGGGTGTAGATCTGAGGCCTCAGGCACAGCTGAACTGAAGCTGTACAGAGCCTTCATCTTCTGCGTTCCAATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTCTACCTCCGACCCCGAAGGCTCCATTGGGTCACACTCACACACAACCACAATGCCAATGCCATCTCCACTGGCTTGCACAAAGATCTCAGGGAGATGCTCCCCGTTATTGTCTTCAAGGAAAGCTTCTCTGTCAAAGATACTCAATGCTCAGTGTGCCTTTTGGAGTACCAAGCAGAGGATAGGCTGCAACAGATACCTGCATGTGGCCATACGTTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCCTACTAACCACTGCTAAATCTTCAACACAGACACCATATATACAGCCACAGAGCAATGAAGAAACACAAGCCATGGCGTTCTCTGAGTCTAGATCTACTAGGCAACTTGAAACCACTGTCCATCAAAATGTCTCTGGAGAAGTTTCTATCAGTGTTCAATGCACTGATGTTGAAGGGCAAAATGTGCGAAACGATGAATAA 639 0.4789 MSEGYPCSCWESEASCGCRSEASGTAELKLYRAFIFCVPIFFTLILLFLFYLFYLRPRRLHWVTLTHNHNANAISTGLHKDLREMLPVIVFKESFSVKDTQCSVCLLEYQAEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTTAKSSTQTPYIQPQSNEETQAMAFSESRSTRQLETTVHQNVSGEVSISVQCTDVEGQNVRNDE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01964 212 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 4 191 - -
Cca04g01964 212 CDD RING-H2_EL5_like 101 144 - -
Cca04g01964 212 Pfam Ring finger domain 101 144 IPR001841 -
Cca04g01964 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 149 IPR013083 -
Cca04g01964 212 SUPERFAMILY RING/U-box 86 150 - -
Cca04g01964 212 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Cca04g01964 212 SMART ring_2 102 143 IPR001841 -
Cca04g01964 212 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01964 Cca-Chr4 38239921 38244291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01964 20 200 C3H Transcription Factor Family AT4G10150 42.254 5.04e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01964 K19039 - gmx:100794211 291.582