Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01960 ATGGACGCCACTCACAGCATGTTCTGTAACAATGATCTGGTTAACCCTCTAAGCTCAATGGGCATGCAAGTATCCTGCATTCTTGTTGTGTCACACGTCTTTAACGTTGTGTTTAGGACTGTGGGACAACCTGGACCCGTTGCACAAATTCTGGCTGGGTTGGTGCTAGGTCCAATGTCACATATTGAGTATATAAAGGCTACATTCTTTCCCGCAAGTTCAGTAAATTACTATGAAGTTGTGAGCTTCTTTTGTCGCATACATTTCATGTTTTTGTTTGGGTTAGAGATGAATATCCACTACACCATGCGCAATCTGCGCATGGTTAGCTTAGTAGCCTGTGGTGGTGCAATAATGGGTGGTGTTTTTGGTCTATCTGTCTCCTTCTATTTGCACCAAGAGTTGAATACCGTTGACAATGCCCCCTTGTATTATTTTTGCATGATCATTATGCTAGTGGTGTCATACACAAGCTCCCCTATGGTGATTCGTTTGGCAGCAGAGTTGAGGTTTGCAGCATCAACTGTGGGGCGAATCGCGGTGTCTTCTGCATTGATCACAGAAATGGGGTGCTTGTTGTTCTTCAATGTGATGGTTAACTGGAGGAAAGAAAACCACATAACTGCTGGTTTTGGTTGCCTTATAATCACTGCCTTGGTGGTTATCATAAACAGGTACTTAGCCGTTTGGTTAAACGCAAGACACCGAAACCAGAAGTACCTCAAGGCTCCTGAGTTGTTACTCATTCTGTTCCTGCTTCTAACTAGCTCAATGGTAATAGAAATTTGGGGTTACAACAGTATTATTAGTTGTTTCATCATTGGCTTGTTGTTCCCTAAGGAAGGCAAAACAGCTAGAACATTGCTGCATAAACTTGGTTATTCTATATACAACTTTGTACTTCCAGTATATTTTGGCTACTTAGGCTTACAATGTGACCTCATAAATGTCTTCAAGAGCCTGGAGCGTGCAGGCAATATGGCCATACTGATATTGTTGAGCATCGGAAGCAAGCTTGGTGGTACTCTCATAGTTTGCCGGTACCTTAAAATCTCTACCAGTGAAGGAATTTTTCTTGGCTTCATATTGAACACTAGAGGTTATGCTGATCTTCTATTCATTGGTGCAGCAGCAAAGCAAGTGATTACTTTTGATTCAGATGCATACAATGTTTTGTTGGTATCAATAGTACTTAACACAATAATATCAGGAATGATTGTTGCTTTCCTAGTAAGAGGGGAAGAAAAAATGTTTGCAAACAACCACACTGCAATTGAGCCACAGGAAGCGGAGGATGAGCTTCGAATTCTGGCTTGTGTGTATGACCCTCGTCAGGTATCTTCCATCCTAGCCACAGTACTAGCAGTGCATGGCTCAAGAGAGTCACCATCCACCACTTACCTAATGCACCTAATAGAGCTTGTGAAGAAGATCAAGTCCAACCTGTTGTTCCATGAAAAGGAAAACGCTGACCTGAGCGATGACGAGGACTATGGTGGCAATGATGTGGTGGAAATCAACAATGCTTTGGATACATTCACAACAGAAACACAGATTCTGATCCACCAAAGAAGGGCAGTGTCTTCTTTCCCAGCTTTGTATGAAGATGTGTGCAATGAAGCAGAAGATCTTCAAGTGTCGGTTATTCTAGTCCCCTTCCACAAGCATCAACGAATTGATGGAAAATTGGAAAGTGGGAAAGAGGGTATAAGGATCACAAATCAGAAGGTGCTGAGACATGCTCCTTGTTCAGTTGGTGTGATAGTAGAAAGAGGACTTGCAAGGGTACCTGGCTTCTCACAACTAGTATCATCTGAAGCCGTACAAAACGTTGCAACACTTTTCTTTGGAGGCCCTGATGATCGTGAGGCTATTGCTTGGAGCCTAAGAATTTCAGGTAGTCCACGTGTGAACTTGACAATCATAAGATTTCTGCTGACTTCTTCATCACAGAATGATCAGATTGAGAGTGGAGAATCTGACGACAAAGAGATTTTGATGTCACTGTCTGGGGAGGAGACAGTGAATGAGATTGACAACACCTTCATGGTTGATTTCTACAACAGGTATGTGACTTCTGGACAAATAGGGTATGTGGAGAAGTTTGTGACGGATGGAGCACAAACAGTGGAGTCATTGAAGGAGATAGGGGACATGTACTCTTTGTTTATAGTAGGAAAAGGTGGTAGAGGACAGAGTTCATTGACAATTGGGATGAGTGACTGGGAAGAGTGTCCAGAACTTGGAACAGTGGGTGATGTCTTGGCCTCTTCAGACTTTGATATTCATGGCTCGGTTTTGATTGTTCAACAACATAGAGATGCCAAGAAAGGCCTCTTGCATGATTAG 2349 0.427 MDATHSMFCNNDLVNPLSSMGMQVSCILVVSHVFNVVFRTVGQPGPVAQILAGLVLGPMSHIEYIKATFFPASSVNYYEVVSFFCRIHFMFLFGLEMNIHYTMRNLRMVSLVACGGAIMGGVFGLSVSFYLHQELNTVDNAPLYYFCMIIMLVVSYTSSPMVIRLAAELRFAASTVGRIAVSSALITEMGCLLFFNVMVNWRKENHITAGFGCLIITALVVIINRYLAVWLNARHRNQKYLKAPELLLILFLLLTSSMVIEIWGYNSIISCFIIGLLFPKEGKTARTLLHKLGYSIYNFVLPVYFGYLGLQCDLINVFKSLERAGNMAILILLSIGSKLGGTLIVCRYLKISTSEGIFLGFILNTRGYADLLFIGAAAKQVITFDSDAYNVLLVSIVLNTIISGMIVAFLVRGEEKMFANNHTAIEPQEAEDELRILACVYDPRQVSSILATVLAVHGSRESPSTTYLMHLIELVKKIKSNLLFHEKENADLSDDEDYGGNDVVEINNALDTFTTETQILIHQRRAVSSFPALYEDVCNEAEDLQVSVILVPFHKHQRIDGKLESGKEGIRITNQKVLRHAPCSVGVIVERGLARVPGFSQLVSSEAVQNVATLFFGGPDDREAIAWSLRISGSPRVNLTIIRFLLTSSSQNDQIESGESDDKEILMSLSGEETVNEIDNTFMVDFYNRYVTSGQIGYVEKFVTDGAQTVESLKEIGDMYSLFIVGKGGRGQSSLTIGMSDWEECPELGTVGDVLASSDFDIHGSVLIVQQHRDAKKGLLHD 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01960 782 PANTHER CATION/H + ANTIPORTER 21 772 - -
Cca04g01960 782 Gene3D - 19 420 IPR038770 -
Cca04g01960 782 Coils Coil 475 495 - -
Cca04g01960 782 Pfam Sodium/hydrogen exchanger family 27 412 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca04g01960 782 PANTHER CATION/H(+) ANTIPORTER 1 21 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01960 Cca-Chr4 38085083 38087847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01960 11 782 Antiporter Super Family AT1G79400 38.590 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01960 - - gmx:100804522 1434.85