Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01958 ATGGAAAAAGAGTTTGATAGAGGGTACATAAAGAAGGGACCATGGAGTAGTGAGGAAGATGAGGTGTTGTTGAGACATGTCACAAAATATGGTCCTAGGGAATGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACTGGGTGCAAATTTACAGCCGAGGAGGAAAGGTTGGTGATAGAATTACAGGCACAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCATGGGAGAACCGATAATGATGTGAAAAACTTCTGGAGCAGTAGGAGAAAGAGGTTGGAGAGGATGTTGCAGAGGCCACCAACGTTAAAGCCACATAAAAACAAGGGAAAACTTCCTCTTAATCTAGTGCAAGTGGAAAAGGTTCCTCCATGCAGTTCCAATCAGGTGGAGGAAAACCTTTCCTACCTTACTTCCTATATGGGAAACAACGAGGTGTTCGAGATGATTAACCTACCAGATTTGATAAAGCCAAACTACCAATACTTGGAAAGTGATCCCCTTAGTGCGGTTGAGGTTGAGGTTGACGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTACTCCCTGAACCACTAATGGACTATCCACTATTCCCAGAGTGCCACGACCTTGTTCCCGAGCCCTTTGATCCAAACTTTATTGATGAGTTCGAGCAGAAAAAATGTTCAGAAGGTGTATGCAGCCAGGAGCTTGAAACCATGTTGCCAACTCTTGGATTTGAAGGAAATTCTCAAAGTACAAGTTCAAATGGCTTATTTAAGGACTTCTCAAGTGAGATTTTTGAATATTTCGAGCAGATTCCAACCTCATCAGAGGTATAG 912 0.4342 MEKEFDRGYIKKGPWSSEEDEVLLRHVTKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQFGNKWAKIATYLHGRTDNDVKNFWSSRRKRLERMLQRPPTLKPHKNKGKLPLNLVQVEKVPPCSSNQVEENLSYLTSYMGNNEVFEMINLPDLIKPNYQYLESDPLSAVEVEVDATPLHTVPSFESSSGYNFPLLPEPLMDYPLFPECHDLVPEPFDPNFIDEFEQKKCSEGVCSQELETMLPTLGFEGNSQSTSSNGLFKDFSSEIFEYFEQIPTSSEV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01958 303 Pfam Myb-like DNA-binding domain 15 65 - -
Cca04g01958 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 55 IPR017930 -
Cca04g01958 303 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Cca04g01958 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Cca04g01958 303 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Cca04g01958 303 PANTHER MYB TRANSCRIPTION FACTOR 1 302 - -
Cca04g01958 303 CDD SANT 68 107 IPR001005 -
Cca04g01958 303 Gene3D - 11 64 - -
Cca04g01958 303 PANTHER TRANSCRIPTION FACTOR DUO1 1 302 - -
Cca04g01958 303 CDD SANT 14 59 IPR001005 -
Cca04g01958 303 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Cca04g01958 303 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Cca04g01958 303 Gene3D - 67 134 - -
Cca04g01958 303 SMART sant 65 113 IPR001005 -
Cca04g01958 303 SMART sant 11 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01958 Cca-Chr4 38069964 38071565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01958 10 299 MYB Transcription Factor Family AT3G60460 42.006 4.12e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01958 Myb_DNA-bind_6 5.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01958 K09422 - gmx:121173231 499.59