Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01958 | ATGGAAAAAGAGTTTGATAGAGGGTACATAAAGAAGGGACCATGGAGTAGTGAGGAAGATGAGGTGTTGTTGAGACATGTCACAAAATATGGTCCTAGGGAATGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACTGGGTGCAAATTTACAGCCGAGGAGGAAAGGTTGGTGATAGAATTACAGGCACAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCATGGGAGAACCGATAATGATGTGAAAAACTTCTGGAGCAGTAGGAGAAAGAGGTTGGAGAGGATGTTGCAGAGGCCACCAACGTTAAAGCCACATAAAAACAAGGGAAAACTTCCTCTTAATCTAGTGCAAGTGGAAAAGGTTCCTCCATGCAGTTCCAATCAGGTGGAGGAAAACCTTTCCTACCTTACTTCCTATATGGGAAACAACGAGGTGTTCGAGATGATTAACCTACCAGATTTGATAAAGCCAAACTACCAATACTTGGAAAGTGATCCCCTTAGTGCGGTTGAGGTTGAGGTTGACGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTACTCCCTGAACCACTAATGGACTATCCACTATTCCCAGAGTGCCACGACCTTGTTCCCGAGCCCTTTGATCCAAACTTTATTGATGAGTTCGAGCAGAAAAAATGTTCAGAAGGTGTATGCAGCCAGGAGCTTGAAACCATGTTGCCAACTCTTGGATTTGAAGGAAATTCTCAAAGTACAAGTTCAAATGGCTTATTTAAGGACTTCTCAAGTGAGATTTTTGAATATTTCGAGCAGATTCCAACCTCATCAGAGGTATAG | 912 | 0.4342 | MEKEFDRGYIKKGPWSSEEDEVLLRHVTKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQFGNKWAKIATYLHGRTDNDVKNFWSSRRKRLERMLQRPPTLKPHKNKGKLPLNLVQVEKVPPCSSNQVEENLSYLTSYMGNNEVFEMINLPDLIKPNYQYLESDPLSAVEVEVDATPLHTVPSFESSSGYNFPLLPEPLMDYPLFPECHDLVPEPFDPNFIDEFEQKKCSEGVCSQELETMLPTLGFEGNSQSTSSNGLFKDFSSEIFEYFEQIPTSSEV | 303 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01958 | 303 | Pfam | Myb-like DNA-binding domain | 15 | 65 | - | - | |
Cca04g01958 | 303 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 10 | 55 | IPR017930 | - | |
Cca04g01958 | 303 | Pfam | Myb-like DNA-binding domain | 68 | 108 | IPR001005 | - | |
Cca04g01958 | 303 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 60 | 115 | IPR017930 | - | |
Cca04g01958 | 303 | ProSiteProfiles | Myb-like domain profile. | 68 | 111 | IPR001005 | - | |
Cca04g01958 | 303 | PANTHER | MYB TRANSCRIPTION FACTOR | 1 | 302 | - | - | |
Cca04g01958 | 303 | CDD | SANT | 68 | 107 | IPR001005 | - | |
Cca04g01958 | 303 | Gene3D | - | 11 | 64 | - | - | |
Cca04g01958 | 303 | PANTHER | TRANSCRIPTION FACTOR DUO1 | 1 | 302 | - | - | |
Cca04g01958 | 303 | CDD | SANT | 14 | 59 | IPR001005 | - | |
Cca04g01958 | 303 | SUPERFAMILY | Homeodomain-like | 10 | 107 | IPR009057 | - | |
Cca04g01958 | 303 | ProSiteProfiles | Myb-like domain profile. | 7 | 59 | IPR001005 | - | |
Cca04g01958 | 303 | Gene3D | - | 67 | 134 | - | - | |
Cca04g01958 | 303 | SMART | sant | 65 | 113 | IPR001005 | - | |
Cca04g01958 | 303 | SMART | sant | 11 | 61 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01958 | Cca-Chr4 | 38069964 | 38071565 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01958 | 10 | 299 | MYB Transcription Factor Family | AT3G60460 | 42.006 | 4.12e-63 | 199 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Cca04g01958 | Myb_DNA-bind_6 | 5.7e-11 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01958 | K09422 | - | gmx:121173231 | 499.59 |