Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01953 ATGGAGCTTGATTTGAATCGGGAGCTTGATTTGAATCAGGAGCCTTTGGACCCACCTCATGCTTCTGCAGATGGATTTGATTCTTTGTTGGAAGAACTAGAATCTGCTCATGAACATGTGCAAGACCGCATTAGGCACCTTGAAGTGATAACTTCCAGAGCCAGGCAGCGTCAGAGGTGGCCACCGGTTCACACTCCGATCCAAATAACCAATTTTACCGGACAAGCTGCAGAGCCAGCTGATGCTCAAGATGAAGGAATGGAGCACCAGGAAGTTGAGGAAAGTGTAGTTGAAAGTGAGAAAGGGTGCAAAAGGAAAGGTGCCCATTTAATAGCTAAAGCATTGGGGATTGAAACAGATGCAAGTAAGGAAGAGGGAAGCACTGGAAATTTTTTTGATTGCAATATCTGCTTCGGCATGGCAAGAGATCCTGTGTTGACCTGCTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGGCATATGTCTATTCAAATGCAAAGGAGTGCCCTGTTTGTAAAGGAGAGGTCACTGAAACTGGAATTATTCCTATCTATGGCAATGCAAGTGCCAGTGCCAATTGTGAGTTGGGATTAAAAGGGGCTGGTTTGAGAGTTCCTCCCCGACCTGTTGCACCCAGAATTGAGAGTTTTAGGCAGCAGCTAATAAGCCAGGGAGCATCTTCTTCTGTGATCCAAAGTATCCGGCGGTTTAATTACCTTATTGGTGGGTTAGGAGCGCGAGTTCAGTCACAAAGCCCCATTGCTGTAAGTGTATCTGATAGAAACAACAGTTTGCTCACTCAATATCGCCTGCAGAATGTTAATGATCGCGGTACTGGTTCCTCTCCGATTTCATCCTTGTTAGTGCAAGGTGCTGCTTCATTTTCTTCCCTCTCATCAGCGTTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGAGGACCTTGAGTTATATATTCATGATCACCAAGTAGGAGGTAGCGGGCAGTTAAACCTCCGCGATGTCAATAGAAATTCAACTGATAATGGGAATGTTGCTGCAGCTGGTTCCTCAGTTGCAGCTTCTACATTTCCTTTTAGTAGGGATTTTAATGCTACTGCTGATATTGGCTCAGAAATCCAGACAACAGATAGTAACATACAGACTGAGACTGCTCCATTTGACCCTTCTTCATCTCACAGCAGAAGCACTCGTGTTTCAACTTCAAGAAGAGTTTCAAATGAGCGCAGAAGAAGGAGGGCAAGATGA 1257 0.4471 MELDLNRELDLNQEPLDPPHASADGFDSLLEELESAHEHVQDRIRHLEVITSRARQRQRWPPVHTPIQITNFTGQAAEPADAQDEGMEHQEVEESVVESEKGCKRKGAHLIAKALGIETDASKEEGSTGNFFDCNICFGMARDPVLTCCGHLFCWPCFYQLAYVYSNAKECPVCKGEVTETGIIPIYGNASASANCELGLKGAGLRVPPRPVAPRIESFRQQLISQGASSSVIQSIRRFNYLIGGLGARVQSQSPIAVSVSDRNNSLLTQYRLQNVNDRGTGSSPISSLLVQGAASFSSLSSALNSAMDSAERLVEDLELYIHDHQVGGSGQLNLRDVNRNSTDNGNVAAAGSSVAASTFPFSRDFNATADIGSEIQTTDSNIQTETAPFDPSSSHSRSTRVSTSRRVSNERRRRRAR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01953 418 MobiDBLite consensus disorder prediction 1 24 - -
Cca04g01953 418 CDD RING-HC_AtRMA_like 132 176 - -
Cca04g01953 418 Pfam zinc-RING finger domain 134 175 IPR001841 -
Cca04g01953 418 MobiDBLite consensus disorder prediction 376 418 - -
Cca04g01953 418 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 11 400 - -
Cca04g01953 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 400 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cca04g01953 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 188 IPR013083 -
Cca04g01953 418 ProSiteProfiles Zinc finger RING-type profile. 134 175 IPR001841 -
Cca04g01953 418 MobiDBLite consensus disorder prediction 376 404 - -
Cca04g01953 418 SUPERFAMILY RING/U-box 130 184 - -
Cca04g01953 418 SMART ring_2 134 174 IPR001841 -
Cca04g01953 418 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01953 Cca-Chr4 37968391 37970969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01953 67 271 C3H Transcription Factor Family AT3G58030 38.647 1.61e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01953 K10666 - gmx:100794016 521.931