Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01952 atggatactgtcaaggataattggcaAGGGGCGGGGGAGGCTTTTACCAAATATTCCAAGAAATATGAAACTGAGGAAGGGAAGAAAGATATTGAAACTCAGCTTCAGAAATTGAAAAAGTATGCAACTGTCATTCGTGTTCTGGCTCATACTCAGATAAGGAAGTTGAAGGGTCTGAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTTAATGGTGGGACAGTTGAGCAGAAGGTGGACTATGCATTCAGCTTCTTCGAAAAGCAAATTCCGGTGGATGCTGTTTTCCAGAAGGATGAGATGATAGATGTCATTGGAGTGACTAAGGGTAAAGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTTACTCGTCTTCCTCGCAAGACTCACAGAGGTCTAAGGAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACAGTTGCCAGGGCTGGTCAGAATGGATATCATCATCGTACCGAGTTGAATAAAAAGATCTATAAGGTTGCCAAGGCAGGTGAAGAGTCACATACAGCCATAACTGAATTTGACAGGACCGAGAAGGATATTACTCCTATGGGTGGATTCCCTCATTACGGCGTGGTTAAGGATGACTATATTATGGTGAAGGGGTGCTGTGTTGGACCCAAGAAGCGAGTTCTCACACTCCGTCAGTCCCTTCTCAAGCAGACATCTCGAGTGGCTCTTGAAGAGATCAAGCTCAAGTTCATCGACACCTCATCCAAGTTTGGACATGGCCGCTTCCAGACAACTCAGGAGAAACAAAAGTTCTTTGGTCGGTTGAAGGCGTAA 825 0.4388 MDTVKDNWQGAGEAFTKYSKKYETEEGKKDIETQLQKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVEQKVDYAFSFFEKQIPVDAVFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKAGEESHTAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01952 274 Gene3D Translation factors 93 270 - -
Cca04g01952 274 Pfam Ribosomal protein L3 7 255 IPR000597 GO:0003735|GO:0005840|GO:0006412
Cca04g01952 274 ProSitePatterns Ribosomal protein L3 signature. 97 120 IPR019926 -
Cca04g01952 274 Gene3D Ribosomal protein L3, domain 3 111 159 IPR044892 -
Cca04g01952 274 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 10 274 - -
Cca04g01952 274 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 10 274 IPR045077 GO:0003735|GO:0005840|GO:0006412
Cca04g01952 274 SUPERFAMILY Translation proteins 16 255 IPR009000 -
Cca04g01952 274 Gene3D - 6 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01952 Cca-Chr4 37949688 37951424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01952 7 272 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 80.524 1.29e-168 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01952 K02925 - gmx:100792174 514.612