Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01950 ATGACGACTCGAATTGCGCCTGGTGTTGGAGCCAATTTGCTCGGTCAACACGCCGCCGAGAGGAATCAAGACGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGTGAGGAGTTATTGTGGGAGTTGTTTGTTCAAGCGGGTCCAGTTGTTAATGTCTATGTTCCAAAAGATAGAGTCACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGGAAACCGATCCGTGTCAACAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAACCTTTTTATTGGCAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCTTTTGGAGTTATTGTTACTAATCCGAAGATCATGAGAGATCCTGATACAGGGAATTCCCGAGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCGTCTGATTCTGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCGTATGCTTATAAGAAAGACACCAAGGGTGAACGGCATGGTACCCCCGCAGAAAGAGTTTTGGCTGCAAGTAATCCAAGTGCACAGAAGAGCAGGCCTCATACTCTATTTGCCAGTGGACCTCCAACACTTCCCAATGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCCCCCCGACCCTTTGCCAATGGGGTTGCTCCTGCCCTTCGTCCACCACCCCCTCAAGCTGCAGCATTCCAGCCTATGCCGGTGGCTGGACAACCAACATGGCATCAGCAACAGCCAGGTCAAACAATGTTACAACCCGTAATGCCACCTCCACCTCAAGTCCAGCAGTTCAGGCCACCTCACCCGGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCAAGGCCTCTTCCACCACCGGCAGTAATGGCAAGTCAGCCACCACCTGTTTGGCGACCACCACCACCTCAGCAACAAGGTGGACGGCCTATGTACCTGCAGTCCTCAATGCCGCCACCACCACCTCCCCAGTAA 1083 0.4986 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAQKSRPHTLFASGPPTLPNVPQANGVAPVPPRPFANGVAPALRPPPPQAAAFQPMPVAGQPTWHQQQPGQTMLQPVMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMASQPPPVWRPPPPQQQGGRPMYLQSSMPPPPPPQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01950 360 PANTHER TRANSFORMER-2-RELATED 1 346 - -
Cca04g01950 360 CDD RRM2_SF3B4 111 193 IPR034159 -
Cca04g01950 360 CDD RRM1_SF3B4 28 100 IPR034158 -
Cca04g01950 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Cca04g01950 360 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Cca04g01950 360 MobiDBLite consensus disorder prediction 194 235 - -
Cca04g01950 360 MobiDBLite consensus disorder prediction 290 360 - -
Cca04g01950 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Cca04g01950 360 MobiDBLite consensus disorder prediction 290 343 - -
Cca04g01950 360 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 346 - -
Cca04g01950 360 MobiDBLite consensus disorder prediction 208 232 - -
Cca04g01950 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Cca04g01950 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Cca04g01950 360 Gene3D - 16 110 IPR012677 -
Cca04g01950 360 SMART rrm1_1 26 99 IPR000504 GO:0003723
Cca04g01950 360 SMART rrm1_1 113 187 IPR000504 GO:0003723
Cca04g01950 360 Gene3D - 111 200 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01950 Cca-Chr4 37929604 37934624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01950 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.32e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01950 K12831 - gmx:100791039 587.8