Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01949 ATGTCTCACCGAAAGTTCGAGCACCCTAGACACGGTTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGTGAAGGCTTTCCCTAAAGACAATCCAAGCCAACAATGTAGGTTGACTGCCTTTGTGGGCTACAAGGCTGGGATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAAGCTTCACAAGAAAGAGACATGTGAAGCTGTCACTATCATTGAAACTCCTCCTTTGGTGGTGGTTGGAGTGGTGGGATATATAAAGACACCTCGTGGCCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTAAGTGAAGAAGTGAAGAGAAGATTTTACAAGAACTGGTGCAAATCTAAAAAGAAGGCTTTTACCAAATATTCCAAGAAATATGAAACTGAGGAAGGGAAGAAAGATATTGAAACTCAGCTTCAGAAATTGAAAAAGTATGCAACTGTCATTCGTGTTCTGGCTCATACTCAGATAAGGAAGTTGAAGGGTCTGAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTTAATGGTGGGACAGTTGAGCAGAAGGTGGACTATGCATTCAGCTTCTTCGAAAAGCAAATTCCGGTGGATGCTGTTTTCCAGAAGGATGAGATGATAGATGTCATTGGAGTGACTAAGGGTAAAGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTTACTCGTCTTCCTCGCAAGACTCACAGAGGTCTAAGGAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACAGTTGCCAGGGCTGGTCAGAATGGATATCATCATCGTACCGAGTTGAATAAAAAGATCTATAAGGTTGCCAAGGCAGGTGAAGAGTCACATACAGCCATAACTGAATTTGACAGGACCGAGAAGGATATTACTCCTATGGGTGGATTCCCTCATTACGGCGTGGTTAAGGATGACTATATTATGGTGAAGGGGTGCTGTGTTGGACCCAAGAAGCGAGTTCTCACACTCCGTCAGTCCCTTCTCAAGCAGACATCTCGAGTGGCTCTTGAAGAGATCAAGCTCAAGTTCATCGACACCTCATCCAAGTTTGGACATGGCCGCTTCCAGACAACTCAGGAGAAACAAAAGTTCTTTGGTCGGTTGAAGGCGTAA 1170 0.453 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDNPSQQCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYIKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKYETEEGKKDIETQLQKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVEQKVDYAFSFFEKQIPVDAVFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKAGEESHTAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01949 389 MobiDBLite consensus disorder prediction 1 36 - -
Cca04g01949 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Cca04g01949 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Cca04g01949 389 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 389 - -
Cca04g01949 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Cca04g01949 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Cca04g01949 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Cca04g01949 389 Gene3D Translation factors 44 385 - -
Cca04g01949 389 Gene3D - 83 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01949 Cca-Chr4 37911879 37915770 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01949 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 84.456 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01949 K02925 - gmx:100792174 766.533