Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01947 ATGGACTACGAACCCTACGACAGTAGCGGTACTGATGATGATCTTCCACCAACCCATCAAAATAGAATTCCCAGGGGAGGAGGAGGACGCCTAGCTGGGAATGGAAGATCTGCTGTTGGGTCAATTCCGTACCCAAGAATGTATGGTGAAATTGATATGGAGGCCCAGATTCATCAACTTGAGCAAGAAGCATACAGTTCAGTTCTAAGAGCCTTTAAAGCTCAATCCGATGCCATTACTTGGGAGAAAGAAAGCTTGATTACGGAGCTGAGAAAAGAACTGAGATTGTCAAATGAGGAACACCGAGAACTTTTAGGTCGGGTTAATGCAGATGATGTGATACGGAGGATAAGGGAATGGAGACAGGCAGGTGGACATCAGCCTGGTGTACTTAGTACTGGTCAAGGTCTTCATGATTCAATTCCCAGTCCCACGGTCTCTGCATCTCGCAAAAAGCAGAAGATTACGCCGTCTGTACCACCATCACGATCTTTTGGTGGGCCTTCTCCTCCATTTCACCCCCAAACAGTGACTGCACCCCATCAACCATCTTCTTCTGCAGCGAAACGGGGATCTGTTCCTGGGTCTAAAGGAAAGAAGCACAAACCTGGTCAAATATTACCTGGTGTCTCTTCAATGAAGCAGTATCCATCCTCGGGACCAGGTGGAAGGAGTCAAGTACCTAATAGAGCTGTCATGGGTGAGCATGCTGAGGGAGCATCGTTTGATTCATTGATTGGTAGGAGAGTACGGACAAGATGGCCTGATGACAATAACTTTTATGAAGCTGTTATCACGGACTACAATCAAGCTGATGGACGACATAATCTGGTCTATGACATGGGGAGTACAAATGAAACATGGGAATGGGTTAATCTATCAGAGATATCTCCCGAAGATATTCAGTGGGTAGGTGAGGATCCTGGAATCAATCATCGTGGGGGTTTTGGAGGCTCTGGTCATGGGATGAATAGGTCTGTAGGACGTGATGGTGTTCCTGGAGCTGGAAGAGGTAGAGGAGCTACAAAGGGGCAATCCAGAAAAGATTTTTTGTCATCACAGAATGGCATAGGAAAGAAGGCGCCTGATGATATACAAATACTTCACACAGACACACTAATCAAAGAGGTGGAGAGGGTATTCAGTGCAAATCACCCTGATCCCCTTGAAATTGAGAAAGCAAAGAAAGTATTGAAGGATCACGAGCAGGCTCTTATTGATGCAATTGCAAGACTTAACGATCTTTCTGATGGTGAAAGCGATGGGGCTGGCCACCATTTCTCACATGCTCAATCAATGGATCGAGAGTGA 1311 0.4607 MDYEPYDSSGTDDDLPPTHQNRIPRGGGGRLAGNGRSAVGSIPYPRMYGEIDMEAQIHQLEQEAYSSVLRAFKAQSDAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWRQAGGHQPGVLSTGQGLHDSIPSPTVSASRKKQKITPSVPPSRSFGGPSPPFHPQTVTAPHQPSSSAAKRGSVPGSKGKKHKPGQILPGVSSMKQYPSSGPGGRSQVPNRAVMGEHAEGASFDSLIGRRVRTRWPDDNNFYEAVITDYNQADGRHNLVYDMGSTNETWEWVNLSEISPEDIQWVGEDPGINHRGGFGGSGHGMNRSVGRDGVPGAGRGRGATKGQSRKDFLSSQNGIGKKAPDDIQILHTDTLIKEVERVFSANHPDPLEIEKAKKVLKDHEQALIDAIARLNDLSDGESDGAGHHFSHAQSMDRE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01947 436 Coils Coil 391 411 - -
Cca04g01947 436 MobiDBLite consensus disorder prediction 133 162 - -
Cca04g01947 436 MobiDBLite consensus disorder prediction 1 37 - -
Cca04g01947 436 MobiDBLite consensus disorder prediction 211 225 - -
Cca04g01947 436 Gene3D ENT domain 48 157 IPR036142 -
Cca04g01947 436 Gene3D - 243 298 - -
Cca04g01947 436 PANTHER PROTEIN EMSY-LIKE 3-LIKE ISOFORM X2 1 436 - -
Cca04g01947 436 MobiDBLite consensus disorder prediction 316 362 - -
Cca04g01947 436 Coils Coil 87 107 - -
Cca04g01947 436 SMART ENT_2 53 126 IPR005491 -
Cca04g01947 436 MobiDBLite consensus disorder prediction 163 177 - -
Cca04g01947 436 Pfam ENT domain 55 123 IPR005491 -
Cca04g01947 436 SUPERFAMILY Tudor/PWWP/MBT 244 284 - -
Cca04g01947 436 MobiDBLite consensus disorder prediction 417 436 - -
Cca04g01947 436 MobiDBLite consensus disorder prediction 125 229 - -
Cca04g01947 436 PANTHER PROTEIN EMSY-LIKE 4 1 436 IPR033485 GO:0050832
Cca04g01947 436 SUPERFAMILY ENT-like 48 155 IPR036142 -
Cca04g01947 436 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 53 140 IPR005491 -
Cca04g01947 436 MobiDBLite consensus disorder prediction 418 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01947 Cca-Chr4 37861135 37870110 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01947 - - gmx:100791651 834.713