Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01946 ATGGCCTCTTCAACTTTTCTTCACTCATCTTCTTTCCTTCTGCTGATTCTCCCTTTTCTCCCATCTGTGTTCAGCCTGACCTGTACTGTTACTAGCATACAGTTAAATTCCTCTCTAGTCACCAATGACACAGTTCCATGGACTTCACCTTTGGGCCACTTTGCCTTTGGTTTCCGAAGTGTTTTATTCGACAACAAGGAATTCAAGTCCGTGCTCGCCGTTTGGTTCAACAAAGACCCCAACCAAACCATAGTATGGCATGCAAAACCAAAACAAGATCCTTCTTTTCCTCCAAGCTCCACGCTGAACCTCACAAGCAAAGGAATTGTAGTGTACCACCCAAATAGCCACGAGATATTGTGGCAACGTCCACAAAATAACAGCGTTCCCTTAGTATCATGTGCTTCTATGCTAGACAATGGAAGTTTCGTGCTTCTTGATAACACTGGAAAACAGGTTTGGGAGAGCTTTGAAGAGCCCACAGATACCATTTTGCCTGGTCAGAATTTAAATAAATCTAAAGACTTCAGGGCACGTCAATCTGACACGAGTTTCTATGATGGCAGTTTTCAACTGAGTTGGCAGGGCGATAGCAACTTGGTTCTTTACTATTCGCCAAAATCGAGCGATGAAACCTCTCAATCTCCAAAACATGATGCTTACTGGGCCACTGGAACTTTCGGAACTGAATCACAGCTCTTCTTTGACGAGTCTGGACACATGTACATAAAGAATGACTCGGGTGTTGTCATCAGTGAAGTTCTGAACGGTGGATCAGACGAGTTCTTGTACATGGCAAGAATTGATCATGATGGGGTTTTCAGACTATATCGCCACAGGAAAGATGAGAACGCGGTTGCTGGTAGCTGCAGTTCGGGGTGGTGGAGTGTGGTGCAACAGTATCCGCAAGATATTTGTCTTTCCTTCACGAGGCAAACTGGTAATGTTATCTGCGGTTATAACAGCTACTGTGTTGCCATCAATGGGGAGCCAGATTGTCAGTGCCCTGATCATTATTCTCCTTTTGAGCATGACAACCTCACAGGTTGTAGGCCAGATTTTCCACTGCCAAGCTGCAACAAAGACGGGTGGGAGCAGAATAAGGATCTTGTGGATTTCAACGAGTATTCAAATTTGGACTGGCCTCTCTCTGATTATGACATGTTGGTTGGAACTGCAATGGACAAGCATATGTGCAGACAAAAGTGCCTAGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGAGGAAAGTTGTTGGAAGAAGAAGTATCCCTTGAGCAATGGAAGGAAGCACCCTAATGTTACTAGAATAGCTTTTGTCAAGGTGCCTAAAACAAATTTGAAAGAGGGTGAGAGAGAAAATTCTTCCCTTGTGCTTGTCATATCAATACTTCTTGGGAGCTCAGTGTTCCTCAATTTCCTTCTATTGGTTGCATTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAAGCTTTTGAATAATCAAAACTTGTCAGCTTCAACGACAAGGTACTTTACTTACAAGGAGCTTGAAGAAGCAACCACAGGGTTTAAACAGATGTTGGGTCGAGGTGCTTTTGGAACGGTCTATAAAGGGGTGTTAACATCATACACAAGCAGTGTTGCCTTTGCTATGGAAAGTGAAGAAGAGGCGTTCATAGATTGGGCATATCGTTGTTATAGCCAAGGGAAAGTGGTTAAATTGGTAGAAAATGATGAGGAGGCAAAGAATGACATGAAGAGGGTGGAAAAGGTTGTGATGGTTGCAATTTGGTGCATTCAAGAAGATCCTTCGCTGAGACCCTCCATGAAGAAGGTTACCCAAATGCTTGAGGGTGTTACGACAGTTTCTGTCCCTCCTCGCCCTTCCATATTCACTACATCATCGTTTAAAACTTCATTTATTTTGTAA 1914 0.4326 MASSTFLHSSSFLLLILPFLPSVFSLTCTVTSIQLNSSLVTNDTVPWTSPLGHFAFGFRSVLFDNKEFKSVLAVWFNKDPNQTIVWHAKPKQDPSFPPSSTLNLTSKGIVVYHPNSHEILWQRPQNNSVPLVSCASMLDNGSFVLLDNTGKQVWESFEEPTDTILPGQNLNKSKDFRARQSDTSFYDGSFQLSWQGDSNLVLYYSPKSSDETSQSPKHDAYWATGTFGTESQLFFDESGHMYIKNDSGVVISEVLNGGSDEFLYMARIDHDGVFRLYRHRKDENAVAGSCSSGWWSVVQQYPQDICLSFTRQTGNVICGYNSYCVAINGEPDCQCPDHYSPFEHDNLTGCRPDFPLPSCNKDGWEQNKDLVDFNEYSNLDWPLSDYDMLVGTAMDKHMCRQKCLEDCFCAVAIYGEESCWKKKYPLSNGRKHPNVTRIAFVKVPKTNLKEGERENSSLVLVISILLGSSVFLNFLLLVALFAAFFIFYHKKLLNNQNLSASTTRYFTYKELEEATTGFKQMLGRGAFGTVYKGVLTSYTSSVAFAMESEEEAFIDWAYRCYSQGKVVKLVENDEEAKNDMKRVEKVVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSVPPRPSIFTTSSFKTSFIL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01946 637 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 538 - -
Cca04g01946 637 SMART blect_4 38 160 IPR001480 -
Cca04g01946 637 Gene3D - 159 287 IPR036426 -
Cca04g01946 637 PANTHER - 2 538 - -
Cca04g01946 637 Gene3D Transferase(Phosphotransferase) domain 1 526 619 - -
Cca04g01946 637 Gene3D - 27 158 IPR036426 -
Cca04g01946 637 ProSiteProfiles Bulb-type lectin domain profile. 36 158 IPR001480 -
Cca04g01946 637 Pfam D-mannose binding lectin 83 181 IPR001480 -
Cca04g01946 637 PANTHER - 540 633 - -
Cca04g01946 637 SUPERFAMILY alpha-D-mannose-specific plant lectins 181 279 IPR036426 -
Cca04g01946 637 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 226 IPR036426 -
Cca04g01946 637 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 540 633 - -
Cca04g01946 637 CDD PAN_AP_plant 365 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01946 Cca-Chr4 37853948 37856797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01946 553 627 Receptor kinase-like Gene Family AT5G38280 39.474 2.19e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01946 - - gmx:100796323 841.647