Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01942 ATGACAGCTGAAGGCTTCTCACTCATAGTGGTTTTCATTCTGCTGATTGAATTAGTTGATTCTCTAAACCGTAGCAATTTTCCAGTGGAGTTCTTATTTGGAACTGCCTCATCTTCTTACCAGTATGAAGGTGCAGCAAAAGAAGGGGGCAGGGGACCAAGTATATGGGACACCTTCACCCACATACATTCAGATAGGATAAGGGACCAAAGTAGTGGAGACCTAGCAGTTGATTCTTACCACCGCTACAAGGAAGATGTGAGTATAATGAAGGACATAGGATTTGATGCATACAGATTCTCTATCTCATGGTCTAGGGTTCTACCTGGTGGAAGCCTGAGGGGAGGTATAAACAGAGAAGGCATCACATATTACAACAATCTTATCAATGAACTCCTCTCTAATGGTTTGCAGCCCTTTGTTACTCTATTTCATTGGGATCTCCCTCAAGCCCTTGAAGATGAATATGGTGGTTTTTTAAGTCCAAATATTCTAAAGGATTTTGCAGACTATGCAGATGTATGCTATAGGGAATTTGGAGATAGAGTGAAGCACTGGATCACTATAAATGAGCCAGTCACCTACACCACACAGGGTTATGCAAATGGATTATTTGCACCAGGAAGATGCTCCAAGTGGTTGCCTTTCTACTGCAGTGTTGGGGATTCTAGTACTGAACCATACCTGGTCACTCACCACCAGATTCTTGCTCATGCAGCTGCTGTCAAAGTCTACAGGGACAAGTACCAGATTTCTCAAAAGGGACAAATTGGAATAACATTGAACTCCCCATGGGTAATGCCACTTTCCCAGTCAAAGGAAGACGTAAATGCAGCATCTAGGGCCCTTGCTTTCCTGTTTGACTGGTTTATGGAGCCACTAAAGTCTGGATCATACCCTGTTGAAATGGTTAATAAAACTGGTGAAAGATTGCCAAAATTTTCGAGGGAGCAATCCTTGATGGTTAAAGGATCCTTTGATTTCGTAGGACTTAACTATTACACAGCAAGTTATGCAGCCAATGTCCCTTGCACAAGAGAAAACCAAACTATGTTTACAGATGCATGTGTTTCTCTCACATCAACGAGGAATGGAGTACAAATTGGTCCGAAGGGTGCCTCAGACTGGTTATACATCTATCCCAGAGGAATTCAAGATCTTTTACTCTACACAAAGGAAAAGTTCAACAATCCAGTCATTTACATAACAGAAAATGGGGTTGATGAACTTAATGACAATGCAAAATCACTTGAGGACCACATAAGAATAGACTACATCAGTAACCATCTTTCCTATGTTCACAGTGCAATACAGAATGGTGTGAATGTGAAAGGCTACTTTGTATGGTCATTGTTGGACAATTTTGAATGGGCAAATGGGTATTCTGTTCGATTTGGAATCGTTTATATTGATTACAAGGATGGATTGAGAAGATATCCTAAGAAATCAGCAGAGTGGTTCAAAAATTTTCTACAATGA 1479 0.4084 MTAEGFSLIVVFILLIELVDSLNRSNFPVEFLFGTASSSYQYEGAAKEGGRGPSIWDTFTHIHSDRIRDQSSGDLAVDSYHRYKEDVSIMKDIGFDAYRFSISWSRVLPGGSLRGGINREGITYYNNLINELLSNGLQPFVTLFHWDLPQALEDEYGGFLSPNILKDFADYADVCYREFGDRVKHWITINEPVTYTTQGYANGLFAPGRCSKWLPFYCSVGDSSTEPYLVTHHQILAHAAAVKVYRDKYQISQKGQIGITLNSPWVMPLSQSKEDVNAASRALAFLFDWFMEPLKSGSYPVEMVNKTGERLPKFSREQSLMVKGSFDFVGLNYYTASYAANVPCTRENQTMFTDACVSLTSTRNGVQIGPKGASDWLYIYPRGIQDLLLYTKEKFNNPVIYITENGVDELNDNAKSLEDHIRIDYISNHLSYVHSAIQNGVNVKGYFVWSLLDNFEWANGYSVRFGIVYIDYKDGLRRYPKKSAEWFKNFLQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01942 492 Pfam Glycosyl hydrolase family 1 25 491 IPR001360 GO:0004553|GO:0005975
Cca04g01942 492 PRINTS Glycosyl hydrolase family 1 signature 325 339 IPR001360 GO:0004553|GO:0005975
Cca04g01942 492 PRINTS Glycosyl hydrolase family 1 signature 400 408 IPR001360 GO:0004553|GO:0005975
Cca04g01942 492 PRINTS Glycosyl hydrolase family 1 signature 419 430 IPR001360 GO:0004553|GO:0005975
Cca04g01942 492 PRINTS Glycosyl hydrolase family 1 signature 440 457 IPR001360 GO:0004553|GO:0005975
Cca04g01942 492 PRINTS Glycosyl hydrolase family 1 signature 464 476 IPR001360 GO:0004553|GO:0005975
Cca04g01942 492 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 31 45 IPR033132 -
Cca04g01942 492 Gene3D Glycosidases 13 492 - -
Cca04g01942 492 SUPERFAMILY (Trans)glycosidases 16 491 IPR017853 -
Cca04g01942 492 PANTHER BETA-GLUCOSIDASE 16 19 491 - -
Cca04g01942 492 PANTHER GLYCOSYL HYDROLASE 19 491 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01942 Cca-Chr4 37793329 37798106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01942 1 491 Glycoside Hydrolase AT5G44640 59.681 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01942 - K01188 gmx:100791121 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01942 04 37793329 37798106 Cca04g01942 04 37793329 37798106 ECH