Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01939 ATGGCAAATGGTTATGCAACAAAATTATCAGATTTCAGCTACGATGTTTTTCTGAGTTTTAGTGGCGGAGCCAGCAATGCTTTTGTTGATCCTCTATGTCGAGCTTTGCATCACAGAGGAATCAACATCTTCAGATCAGAAGATGGCAAAACCAGACCCGCCATTGAAGAAATTGAAAAATCCAAAATGGCAATGGTTGTGTTGTGTCACAACTATGCATTTTCCAAGGAGTCCCTTGATGAACTAGCCAAGATCAGTGAGTATGTTGACAATAAAAGAAAACAGGTTTGGGCAATTTTTTACAAAGTGGAACCATCAGATGTACGAAAACAAAAAAATTCCTATAAAAAAGCCATGGATGGTCATGAAATGAGATACGGAAAAAACTCGGAGAAGGTAAAAGCATGGGGGAATGCTTTGACTAGAGTATGCGATCTAAGCGGAATACATTTCAAGGATGATATGTTTGAAGCTGAACTTGAGAAGATTGTTGAAGCAGTGTTCTCTAAATTAGCTCCCGTGCCTGTACAAATGAACCATGTAGTTGGACTCGATTATCACTTTGAACAGGTGAAATCATTTTTAGATGTTGAGTCTAGTGATACCGTTCGCATGTTGGGAATTTATGGAGCTGGAGGAATAGGTAAAACTACACTTGCAGTCTATTTATATGAAAAGATTAGGCATTATTACTTTGAAGCTGCTAGTTTTCTGATTAAAGACAGAGAAAACCCAAACAAGAGCAATAATCTCTTGGAAGATCTTCAAAAGAAACTTTTATCTCTAATGGGCGTAGAGACAGAAACCATGATGGGGAGTACAAATAAAGGAGAACTTGAAATCAAACGCAGGCTTGGCCATAGAAGAGTTCTTCTAGTTTTGGATGATGTTGATACAAAAGAACAATTGGAATCACTGGTTGGAAAACTTAATTGGTTTGGTTCGGGTAGTAGGATCATTATAACAACAAGAGATGCAGCTGTGCTGGATTATGATAATGGAATTAAGAAATATAAAATGGAGGAGCTAAAAGATTGTGACGCACTTGAACTTTTTTGTTGGAATGCCTTTGATATGCCTGGACCTGCAAAAAACTTTGAAAATATTGCTCATCGTGCAATAGGTTATGCAAAGGGTGTCCCTTTGGCTTTACAAGTATTAGGATCCAATTTGAAAGGAAGAATCATAGAGGAATGGGAAATTGAATTGGGAAAATATAGGAAGGTTCCAAATGCTGAGATTCAAGGTGTCCTAGAAATAAGTTATTATAGCCTGCCTGAGCCTGAGATGAAAATATTCTTGGACATTGCTTGTTTTTTCAAAGGGGAGAAATCGAATTATGTTAAAAGGATATTGATGGCTTCTGATTTAAGTATTCAAGTACTTACTTCTAAATGTCTATTGATAGTTGATGAAAATGGTTGCTTGGAGATGCATGATCTAATACAAGACATGGGTAGAGAGGTTGTCAGGAAGGAATCACCATATAAACCTGGTAACCGCAGTAGATTATGGTCTCATGAAGATGTTCTTCAAGTACTGAAAGAAAACTCAGGAAGTAGTACAATAGAAGGAATAATGCTTCATCCCCCTAGGCTTGAAGAAGTAGAAAATTGGACTAATACCGCCTTTGAGAAGATGAAGAATCTCAGAATTCTTATTGTTCGGAATACAAAATTTTCAACAGGACCTAGTTATCTACCAAATAATTTACGACTCCTTGACTGGATTGGATTCCCATCGAAGTCTTTTCCACCTTCTTTTTATCCTGAGAATATCGTTGACTTCAAGTTATCTCATAGTCCTTTGGTATTGGAAAAGTCACTTGAAAAGGTATTTCAGGATTTGACTTTTGTCAATCTTTCCCATTGTCAGTTCATAACTCAAATACCGAACATGCATGGAGCTAAAAACTTAAGAGTATTGACAATTGACAAATGCCTTAAATTGGAAGGGTTTCATCAATCCATTGGGCATATGCCCAATCTTGTATACTTAAGTACATCAGAGTGTATCATGCTCAGGAGTTTTGTGCCAAGAATGTATTTGCCATCTCTGGAAATGCTTTCATTTAACTTTTGCAGTAAACTTGAAAAACTCCCAGAAGTAGTGAGAAAGATGGATAAACCATTAAAAATACACATGAAAAATACTGCTATTAAGAAGTTTCCGGATTCTATTTGTAAACTTACAGGGCTTGAGTATGTAGACATGTCAGCTTGCACAGGACTCAGAGATATATCAAGTTTTGTATCACTGCCAAAACTTGTCACGTTAAAGATGAATGGATGCTCTCAACTCGCAGAATCATTTAAAATGTTCAGAAAGAGCCTTTCTGAAGCAAATAGCCTGCCGAATTTAAAGGAATTACATTTAAGCAGGGCTAATCTGTCGTATGAAGATCTTTCCATAGTTCTTCATATATTTCCAGAATTGGAGTACTTGAATGTATCCCACAATGAAATTGAATCCATCCCAGAATGCATCAAAGGATCTTTGCAGTTGAAGAATCTTGATGTAAGTTTTTGCAGGAATCTTGGGGAAATTCCAGAACTTCCATCAAGTATTCAAAGAGTAAATGCAAGATACTGTCAATCCTTAACTATAGAGTCATCAAGAGTGCTGTTATCCAAGGTTTATAAAGAAATGGAGAGAATACATGTTGTGATGCCAAAAACTGGAATTCCAAAGGGGTTTCAATGTATTGACAGAGAAGATATTCCACTTTTTTGGGCTCGCCGGAAGTTCCCTGTTGTTGCTTTAGCATTTGTGTTTAGGGAAGTAAAAACTAAAGAGGATATACTGATGGATACCTCAGAATTGTTGCCTGGAGTTGTATCTGCTGAGGAGTCCTACACTGTCGGCCTGAACTTGTTTATAGGTGGCCAAGAAATCTGTTGCAAAGTTCACAATTACTGCAGTGTTGGGGATCATCACATGTTAGTATGTGATCTACAGGTTTTGTTTAATGATGAAGGGTGGAAGGGTCTTGATGCATATGTTGGAGATGACTGGAAAGCCATTCAAGTTCAATGTGAATCAACTTTGAGTCTGAGTCATTGGGGAGTTTATGTGTACAAGCAGAAAACAAACACTGATGATATTCTATTTAGTTTTCCCGATTCAACAAGTTTGGTTTCAAAAGCAAGTCCACAGAAGAAAACAAGACATATACAATGTTACGATGCAATAGAAAAATTTGGCCAGAACTTGAATTCATTTAAAATAGAACAAACTGCCTCAGTTGCAAACATGCTATTGAGATGGTGGAGGAATGCCAAGGCTAATATTAGAGGGGATGTTTCTGCCTCTACATATGACGCAAGTTTATTGCAAGAGCATGAAGATGTTGTCTGGGATCTGGCACACATTTTGGAGATGTTGATGGAAACATTGCCAAAACATACTAATTCAGAAGTTCAAAGAACAGGCCAATTGGTGGTTGAATTATTGGTTGCACAGGCACAACATATAAAGGAATATTACCATGAGAAGTTTCACTACAATCTAACTATGCCTATTATTCTAGTGGAATGTCAATGTCACCCTTGCACAGATTTAGAAAGAGCTCAAAGCCTTCGTTATTGGGGAACCGTGGAGCTAGAAGAAGGAGATCCACTTGTGTGGAAAATATGGAAGAGAAATGAAGCATTCAAGGAGAGGCTAAATTACACTGTTCTGTTGAAATGTGAGCATCATTCTACTAAGGAAGCTTCAAGCTCTAGCCATAGGGATTCCTTGGTGGAAGAATACAATGATCCTACATTGCAAGCATTGATGAGGAGGATAGAAGAAGATACTGCGAGGTTGAATAAATCTTATGCGAAGTTGAAGGCTTCTATTGTTCAAACGAATGTCCCAGTTTCTGAAAAATATCTTCTGGAAATGACAATCATTAGAGGTCTAGAAAGCTTGGGAAGATTAGGGTCTAATTTCTTCAAGACAACTTATGGGAAATTGAGGATGGAGCATGATGCTCATAGCACTACTCATGTGCAGCATGAGTTAAGGATGGACCATGGTGCTCAAAGCTCTACTTTGAATAAGGAGCAACATAAGTTGGGGGTGGAGCATGATGCTCAGAATTCTAATCAGGAAAAGAATAACTTGGTTTGGATCAGATTATTATTTGGTAGATTTTGGAGGCAAAGATAG 4155 0.3759 MANGYATKLSDFSYDVFLSFSGGASNAFVDPLCRALHHRGINIFRSEDGKTRPAIEEIEKSKMAMVVLCHNYAFSKESLDELAKISEYVDNKRKQVWAIFYKVEPSDVRKQKNSYKKAMDGHEMRYGKNSEKVKAWGNALTRVCDLSGIHFKDDMFEAELEKIVEAVFSKLAPVPVQMNHVVGLDYHFEQVKSFLDVESSDTVRMLGIYGAGGIGKTTLAVYLYEKIRHYYFEAASFLIKDRENPNKSNNLLEDLQKKLLSLMGVETETMMGSTNKGELEIKRRLGHRRVLLVLDDVDTKEQLESLVGKLNWFGSGSRIIITTRDAAVLDYDNGIKKYKMEELKDCDALELFCWNAFDMPGPAKNFENIAHRAIGYAKGVPLALQVLGSNLKGRIIEEWEIELGKYRKVPNAEIQGVLEISYYSLPEPEMKIFLDIACFFKGEKSNYVKRILMASDLSIQVLTSKCLLIVDENGCLEMHDLIQDMGREVVRKESPYKPGNRSRLWSHEDVLQVLKENSGSSTIEGIMLHPPRLEEVENWTNTAFEKMKNLRILIVRNTKFSTGPSYLPNNLRLLDWIGFPSKSFPPSFYPENIVDFKLSHSPLVLEKSLEKVFQDLTFVNLSHCQFITQIPNMHGAKNLRVLTIDKCLKLEGFHQSIGHMPNLVYLSTSECIMLRSFVPRMYLPSLEMLSFNFCSKLEKLPEVVRKMDKPLKIHMKNTAIKKFPDSICKLTGLEYVDMSACTGLRDISSFVSLPKLVTLKMNGCSQLAESFKMFRKSLSEANSLPNLKELHLSRANLSYEDLSIVLHIFPELEYLNVSHNEIESIPECIKGSLQLKNLDVSFCRNLGEIPELPSSIQRVNARYCQSLTIESSRVLLSKVYKEMERIHVVMPKTGIPKGFQCIDREDIPLFWARRKFPVVALAFVFREVKTKEDILMDTSELLPGVVSAEESYTVGLNLFIGGQEICCKVHNYCSVGDHHMLVCDLQVLFNDEGWKGLDAYVGDDWKAIQVQCESTLSLSHWGVYVYKQKTNTDDILFSFPDSTSLVSKASPQKKTRHIQCYDAIEKFGQNLNSFKIEQTASVANMLLRWWRNAKANIRGDVSASTYDASLLQEHEDVVWDLAHILEMLMETLPKHTNSEVQRTGQLVVELLVAQAQHIKEYYHEKFHYNLTMPIILVECQCHPCTDLERAQSLRYWGTVELEEGDPLVWKIWKRNEAFKERLNYTVLLKCEHHSTKEASSSSHRDSLVEEYNDPTLQALMRRIEEDTARLNKSYAKLKASIVQTNVPVSEKYLLEMTIIRGLESLGRLGSNFFKTTYGKLRMEHDAHSTTHVQHELRMDHGAQSSTLNKEQHKLGVEHDAQNSNQEKNNLVWIRLLFGRFWRQR 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01939 1384 ProSiteProfiles Leucine-rich repeat profile. 811 832 IPR001611 GO:0005515
Cca04g01939 1384 Coils Coil 1260 1280 - -
Cca04g01939 1384 Pfam TIR domain 14 172 IPR000157 GO:0007165
Cca04g01939 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 436 IPR027417 -
Cca04g01939 1384 Gene3D - 171 335 IPR027417 -
Cca04g01939 1384 SUPERFAMILY L domain-like 478 864 - -
Cca04g01939 1384 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 1051 IPR044974 GO:0006952
Cca04g01939 1384 SMART till_3 13 146 IPR000157 GO:0007165
Cca04g01939 1384 PRINTS Disease resistance protein signature 205 220 - -
Cca04g01939 1384 PRINTS Disease resistance protein signature 284 298 - -
Cca04g01939 1384 PRINTS Disease resistance protein signature 377 391 - -
Cca04g01939 1384 PRINTS Disease resistance protein signature 751 767 - -
Cca04g01939 1384 Pfam NB-ARC domain 185 400 IPR002182 GO:0043531
Cca04g01939 1384 Gene3D - 342 426 IPR042197 -
Cca04g01939 1384 ProSiteProfiles TIR domain profile. 12 171 IPR000157 GO:0007165
Cca04g01939 1384 Gene3D Ribonuclease Inhibitor 713 879 IPR032675 -
Cca04g01939 1384 Gene3D Ribonuclease Inhibitor 528 712 IPR032675 -
Cca04g01939 1384 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 1051 - -
Cca04g01939 1384 Gene3D - 9 170 IPR035897 -
Cca04g01939 1384 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 148 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01939 Cca-Chr4 37743329 37748841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01939 2 820 WRKY Transcription Factor Family AT4G12020 29.446 6.82e-75 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01939 - - gmx:100801337 2050.79