Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01938 ATGGCAAACCTGAATGAGGATGATTTCTTCTATGATGTATTTCTGAGTTTTAGAGGAGGGACCCGTTACGGGTTCACGAATGATCTGTACGAGGCTTTGCGGCAAAAGGGAATGTACATTTTCAGAGACAGCAACGAGCTTAGGATTGGGGCAGAAATCAGGCCCTCGCTGGTGAAGGCAATAGAAAAATCTAGAATGTGGATTGTTGTGCTCTGTGAAGACTACGCCTCTTCCACTTGGTGCCTTGACGAACTTGCACACATCATTCGCTGCTATCATGCTAACAAAGGGAAACAAATTCTGCTCATATTTTACAAAGTGGAACCTTCTCATGTGTGGGAGCAGAAGGAAAAGTACGCAAAAGCCATGATTGAACATGAAAAGAGATTCGGAAAAGACTTTGAGGAGAAGGTCAAAATATGGAGGAAGGCTTTGTCCGAAACACGCCACCTGACCGCAGAACACTGCAAAGACGACCTGTGTGAACCTGGACTTATTGAGAAGATTGTTAAAGACACTTATGCTAAATTACCTGCAATCCCCTTACCTATTAAACATGTAGTTGGTATTGATTCTCGGTTTCAAGAGGTGAAACCAATCATAAATATTGAGTCTCATGATACTGTCTGCATCTTAGAAATTTATGGAGCTGGCGGAATTGGCAAAACTACATTTGCCTTGAATATATATAACAATATCAGACATCATTTTCAAGCTGGAAGTTTTCTTGCTAATGTCAGAGAAAAATCAAACAAAAGCTCTAAAGGCCTCGAAGATCTTCAAAAGACACTTCTATCTGAGATGGGTGAAAAAACAGAAATCATGATGGGCAATACTTTTAATGGGGCCAATGAAATCAAAGGCAGACTTAGTCGTAAAAAGGTTCTTTTAGTTTTGGATGATGTTGGTACGATAAAACAATTGGAGTCCCTAGTTGGAGGAGGTGACTGGTTTGGTACTGGCAGTAGGATAATTATAACAACAAGGGATACAACACTGCTAGATGAGCATGTCATTAATGGTGTTATCATTCAAAAATATGAAATGAAGGAGCTAAATGAACGTGACTCTCTTGAACTCTTTTGTTGGCATGCCTTCAAAAAGAGTGCACCAGAAAAAAACTTTGAAGAAGTTTCTAATCTTGCAGTGCTTTATGCAAAAGGTCTTCCGTTAGCTTTAAAAGTAATAGGCTCCAATCTAAAGGATAGGAGCCTAAAGGATTGGAAAATGGAATTAAACAAATATGAAAATATTCTAAATGACAAGATTCAAAAAGTACTTGAAATAAGCTACCATAGCTTATATGACTTGGACCAGAAAATTTTCTTGGACATTGCTTGTTTCTTCAAAGGAGAGAAATGGGAATATGTTGAAAGGATACTAAGGGCATGTGATTTCTTCCCAAGTATACAAATATTTATTGCGAAATGTCTCATAACTATAGATGAAAATGGCTGCCTGGATATGCATGATCTAATACAAGATATGGGTAGGGAGATTGTTAGAAAGGAGTCATCAAATGTTGGTGACCGTAGCAGACTATGGTCTCATAAGGAAGTTCTTCGAGTACTTAAAGAAAACTCGGGAAGCAACAGAATTGAAGCAATAATGCTTGATCCCCCCAGTCATGTAGATGTATATGAGTGGACAGATACTGCTTTTGAGATGATGAAGAACCTAAGAATTCTAATTATTCGGAACACATCATTTTCAAAGGCACCTAGTTATCTACCAAATACTTTACGACTGCTTGATTGGAAAGGTTACCCATCCAAGTCTTTCCCACCACAATTTTATCCCCAAAGGATTGTTGATTTCAAGCTACCTCATAGTTTTCTAATGTTGGAAAAGCCATTTCAGAAATTTGAGGATTTGACATTCATCAACCTATCACAGTGTCAGTCCATAACTCGAATTCCTAATGTGTCTGGAGCTATAAATTTAAAAGTCTTGACACTTGACAGATGCCATAAAGTGGAAGGATTTGATAAATCCATTGGATTTATGCCTAAGCTTGTGTATTTAAGTGCTTCCAGGTGCAACAAGCTCAAAAGTTTTGTGTGCAGCATGAATTTACCATACCTCGAGGTGCTTTCATTCAACTTCTGCACAAGATTTGAACGCTTCCCAGATGTAAAGCAAAAGATGGATAAGCCATTAAAGATTTACTTGGTAAATACTGCCATTAAGGAGTTTCCAAAGTCCATCAGCAACCTTACAGGGCTTGAGTACTTGGATATTTCAAGTTGCACAAGACTGAAGAATCTACCAAGCAACTTGCTATTATTGCCAAAACTTGTGACCTTATTAGTTGATGGGTGTTCACAAATTGGAGAATCATTTAAAAGGTTTAGAGAAAGGCATTCAATAGTAAATGGTTGGCCAAATTTGACGACACTTCATCTAAGCGAGACTAATTTATCAAATGAAGAATTGTGCGCAATTCTAAAAGGTTTTCCAAAAATGGAAGCCTTGAAGGTTTCTTACAATGATTTGGTATCTCTCCCAGCATGCACCAAAGGATCCCTGCACTTAAAAAGTCTTGATATGAGTCATTGCAACAATCTCAGGAGCATTCCAGAACTCCCTCTAAGTATCCAAAAAGTAAATGCGAGATATTGTTGGGGCTTAACTTCACAGGCATCAAAATTGCTGTTGTCTAAGGTTCGCCAAGAAAAGGAAAGAATTCAATTTGTGATGCCAAAAACAAACATTCCAAAATGGTTTGATTATATTAGCAAGGAAGGTATTCCGTTGATGTGGGCTCGCAATAAGTTCCCTACTATTGCTTTAGCATTTGTGGTGGGCGAAGACAAGAAGAGTGTCATGAAAAAGTTTCCCTTCCCCCCTACAGAATTGGGCTTGCCCCAAGTCCAGGTAGAGCTGTCCCACACAGTTGGAGTCCACTTGTTCATAAACGGCCAAGAAATGTGCCGCAAAGAGAACCATTATTGCAGCGTTGGGGAGGATCACGTGCTGTTGTGTGATCTACGGGTTTTGTTCAGTGACGAAGAATGGCAAGGTCTTGATGCACATGTTATTGGAAATGAATGGAGGGCCATTCAGGTTCAATATCACTCATTCTTGCCATTGAGAAAATGGGGAGTATTTGTGTACAAGCAGAAAACAAACATTGATGATATCCGATTTAAGAATTCTAGCATCCCTATCCCATCATCAGTTTTGGTTCCAAAAGAGCAGTTTGAGCAAACATGCAGGCATTTCTATGCAAACTTCAATCCGAGAGAACTTTTAGGCCAGTATTATTTGTCTCTTTTTGACAAGGCACATGCATTTACAAAGTTTCTTTTAAGGTCTGTGAGGCACACTATTGCTGACTCTAAAGGAAAAGTTTCAGCCTGTGATTACGGGGCAAGTATAGAACAATATCATGAGGAATCTACCTGGGATGTGTTGCGAGTCATAGAGATTATAAAAGAGAGCACACCAAAACATGTTCGTGATACATACCCTAATGATGCCATGCAACATGGATACAGAGTGATGGAAGAAAACTTAAGGGCTCGGATAGAATTTATGAGGGAAGAAGGGCAAGACACTTTTGTCCATGATATGCTTATTATCCTAGAGGATGATCAGGAAGATCCAAGTCGGCATCTTCGTCGGCGTCGCTATTGGGGAAGGTTGCACATAAAACATGGAGAACCAGGGTTCGTTGCAGTATCCCGAGTTGTGTGGAGCTCATCAGTGTCAAGCAACATAGCTCCACTGGACATCACATTCATTGTTCTATTGAAAGCTTCAACCACTGAGAAGGGGAAGGAACCGGAAGAACGTGATTGCCACGAGTACGACCCTGCTTTGGAAGAATTGATGAGTAGGATAGCAGAAGATGCTATGTGTTTGAGGTTGAATAAATATAATGGGAAATTGACTGCCTCTATTGTTCTGCTTCCCAATGGTCGTGAATTTGTTTCTTTCAAATATTTGGCAGAAGCAGTATTCTTGGGGGGAAAAGAACGTTGGGATGAAGGGAAATGGACATGGGCAACAATCAAATACGTATGGTCGATGTTGCTAATGTTTCGTTTCTTCCCATGGGGATTGTTGGGAACTAACTTCAAGACCATGTCCTACGGCAAGTTAAGGGTTGAGCATGATGCTGGTCGTACCTCCAATTGGTTGGAGCGTTTAATTAAATTTGATTTATCATTTATATGGAAAGGCTTATGGATTTTCTTACGGTTGTATTTGTCAATTAAACTTATCAAAGTGTTTCTTATAGAGCTGATTCATATAGTCAATGACATGATGTGA 4278 0.3948 MANLNEDDFFYDVFLSFRGGTRYGFTNDLYEALRQKGMYIFRDSNELRIGAEIRPSLVKAIEKSRMWIVVLCEDYASSTWCLDELAHIIRCYHANKGKQILLIFYKVEPSHVWEQKEKYAKAMIEHEKRFGKDFEEKVKIWRKALSETRHLTAEHCKDDLCEPGLIEKIVKDTYAKLPAIPLPIKHVVGIDSRFQEVKPIINIESHDTVCILEIYGAGGIGKTTFALNIYNNIRHHFQAGSFLANVREKSNKSSKGLEDLQKTLLSEMGEKTEIMMGNTFNGANEIKGRLSRKKVLLVLDDVGTIKQLESLVGGGDWFGTGSRIIITTRDTTLLDEHVINGVIIQKYEMKELNERDSLELFCWHAFKKSAPEKNFEEVSNLAVLYAKGLPLALKVIGSNLKDRSLKDWKMELNKYENILNDKIQKVLEISYHSLYDLDQKIFLDIACFFKGEKWEYVERILRACDFFPSIQIFIAKCLITIDENGCLDMHDLIQDMGREIVRKESSNVGDRSRLWSHKEVLRVLKENSGSNRIEAIMLDPPSHVDVYEWTDTAFEMMKNLRILIIRNTSFSKAPSYLPNTLRLLDWKGYPSKSFPPQFYPQRIVDFKLPHSFLMLEKPFQKFEDLTFINLSQCQSITRIPNVSGAINLKVLTLDRCHKVEGFDKSIGFMPKLVYLSASRCNKLKSFVCSMNLPYLEVLSFNFCTRFERFPDVKQKMDKPLKIYLVNTAIKEFPKSISNLTGLEYLDISSCTRLKNLPSNLLLLPKLVTLLVDGCSQIGESFKRFRERHSIVNGWPNLTTLHLSETNLSNEELCAILKGFPKMEALKVSYNDLVSLPACTKGSLHLKSLDMSHCNNLRSIPELPLSIQKVNARYCWGLTSQASKLLLSKVRQEKERIQFVMPKTNIPKWFDYISKEGIPLMWARNKFPTIALAFVVGEDKKSVMKKFPFPPTELGLPQVQVELSHTVGVHLFINGQEMCRKENHYCSVGEDHVLLCDLRVLFSDEEWQGLDAHVIGNEWRAIQVQYHSFLPLRKWGVFVYKQKTNIDDIRFKNSSIPIPSSVLVPKEQFEQTCRHFYANFNPRELLGQYYLSLFDKAHAFTKFLLRSVRHTIADSKGKVSACDYGASIEQYHEESTWDVLRVIEIIKESTPKHVRDTYPNDAMQHGYRVMEENLRARIEFMREEGQDTFVHDMLIILEDDQEDPSRHLRRRRYWGRLHIKHGEPGFVAVSRVVWSSSVSSNIAPLDITFIVLLKASTTEKGKEPEERDCHEYDPALEELMSRIAEDAMCLRLNKYNGKLTASIVLLPNGREFVSFKYLAEAVFLGGKERWDEGKWTWATIKYVWSMLLMFRFFPWGLLGTNFKTMSYGKLRVEHDAGRTSNWLERLIKFDLSFIWKGLWIFLRLYLSIKLIKVFLIELIHIVNDMM 1425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01938 1425 Gene3D - 178 341 IPR027417 -
Cca04g01938 1425 Gene3D Ribonuclease Inhibitor 530 721 IPR032675 -
Cca04g01938 1425 Gene3D Ribonuclease Inhibitor 722 894 IPR032675 -
Cca04g01938 1425 PRINTS Disease resistance protein signature 211 226 - -
Cca04g01938 1425 PRINTS Disease resistance protein signature 289 303 - -
Cca04g01938 1425 PRINTS Disease resistance protein signature 386 400 - -
Cca04g01938 1425 PRINTS Disease resistance protein signature 737 753 - -
Cca04g01938 1425 SUPERFAMILY "Winged helix" DNA-binding domain 421 525 IPR036390 -
Cca04g01938 1425 ProSiteProfiles Leucine-rich repeat profile. 844 866 IPR001611 GO:0005515
Cca04g01938 1425 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 1095 IPR044974 GO:0006952
Cca04g01938 1425 Gene3D - 6 177 IPR035897 -
Cca04g01938 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 445 IPR027417 -
Cca04g01938 1425 Gene3D - 351 435 IPR042197 -
Cca04g01938 1425 SUPERFAMILY L domain-like 543 880 - -
Cca04g01938 1425 SMART till_3 10 151 IPR000157 GO:0007165
Cca04g01938 1425 Coils Coil 405 425 - -
Cca04g01938 1425 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 1095 - -
Cca04g01938 1425 Pfam TIR domain 11 176 IPR000157 GO:0007165
Cca04g01938 1425 Pfam NB-ARC domain 210 433 IPR002182 GO:0043531
Cca04g01938 1425 ProSiteProfiles TIR domain profile. 9 177 IPR000157 GO:0007165
Cca04g01938 1425 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 150 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01938 Cca-Chr4 37735229 37740712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01938 11 774 WRKY Transcription Factor Family AT4G12020 29.686 1.02e-76 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01938 - - gmx:100800797 1670.98