Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01936 ATGAAACTGGTTGTGGAGGTTATTAATGCTCATGATCTTATGCCCAAAGATGGTGAAGGATCAGCCAATCCCTTTGTGGAAGTAGACTTTGAAAACCAGCTGAGCCGAACCAGAACTGTCCCAAAGAACCTCAACCCCACTTGGAATCAGAAACTAGTCTTCCATTTAGATGCAACCAAACCTTACCATCGCCAAACTATTGAAGTCTCAGTCTACAGCGAGAGGAGAGTCACTCCTGGCAGAAACTTCCTTGGAAGGGTAAGGATTCCTTGCTCTAACATTGTCAAGCAAGGTGAGGAAGTGTATCAGATTTTCCCTCTTGAAAAAAAGTGGTTTCTCTCATCTGTTAAGGGTGAGATTGGCCTCAAAATATACATTGCATCAGactccaactccaactccaacatcaaaccaaaaccTTTTTCTCCTATTTTCCCTTCAGAACAAGAAAATCTCCCACCTTCCACTCCTCCCCAAGAATCCTCTCCTTCTAACAAAGACACAACACTAGAAGCTGGTCCCAGTGAAGAGGTTCCTGCATTTGACACCCCTAAAGCAAGCACAGAAGAAGCAGAAGTGTATTCTGTTGCAGTGCCAGATTGCTCCACCACAGAAGCCCGGTCTAGCGGCATTGATATTGATCAAGAGCCACAGAAAGAAAGCAGAGAACCTGTTCTAGAGACAGTTCAACAACTAGACAAGCACCAAGTTCTCCAGCCACAAATGATTTCAATAAAGAGAAGACCACAAGGTACTCCAATCACCATGCACTCGGTTGATCCTCAATCCCAATCTAGCTATCATGAAAACTATAACCACAATGACACCAACTCACAGCCAAGGATTTCAATAAAGAGAAGACCACAAACACAAGGTACTCCTTTCACAATGCACTCAGTTGATCCACAAGTCCAACCAAGCCATGGTGAAAGCTACAATCACAATGACACCAACATGCAGCCAAGGATTTCAATTAAGCGACGACCGCGAGCACAAGGTACTCCATCACCAATGCACTCCATTAATCCACAAGTCCATGCTAGCCATAATGATAGCTACAACCTCATGGGAACCAGGCCACAACAGCCAAGGCTTTTAGTAGAGAGACAACCACAGATCAATACTTCACTCACCATGCACCGAGTAAACCCCCAAGTCCAAACTAGCAATGATGAAAACTACAATCTCAGTGACACCAATTCACCTCTTGGTGAGCAGTGGCCTAATGGTGGAGCTTATGGTAGAAGAGGGTGGCTGAGTGGTAGTGACAGATTCACCAGCACATATGACCTTGTTGAGCAGATGTTTTATCTGTATGTTCGCATTGTGAAGGCAAAAGATCTTCCCCCAAGCACCCTCACTTCAAGTTGTGATCCTTATGTGGAAGTGAAGTTGGGGAACTACAAAGGAAGAACAAAGCACTTTGAGAAGAAATTGAACCCAGAGTGGAACCAAGTATTTGCTTTCTCCAAAGACCGCATTCAGTCTTCTGTTCTAGAAGTCTTTGTGAAAGATAAAGCAATGATTGGCAGAGATGACTACCTTGGAAGGGTGGTTTTTGACCTCAATGAGGTTCCAACCAGAGTTCCACCAGATAGTCCACTAGCTCCTCAGTGGTACCGACTTGAGGACTGGCGCGAAGAAGGCAAGTTGAGGGGAGACATCATGCTTGCAGTTTGGATGGGAACACAAGCTGATGAGGCTTTCTCAGATGCTTGGCATTCCGATGCTGCCACTGTCTATGGAGAGGGTGTTTTCAACATCAGATCAAAGGTTTACATGTCACCAAAACTGTGGTATCTCAAGGTGAATGTAATTGAGGCTCAAGATGTGATCCCTAGTGAAAGAAATCGCCTACCAGAGGTTTTTGTGAAAGCTCAAGTAGGCTGTCAGGTGCTAACAACCAAGATATGCCCCACTAGAACAACCACCCCATTCTGGAATGAAGATTTGGTTTTTGTAGCCTCTGAGCCATTTGAGGAGCAGTTGACAGTTACTGTGGAGGATCGCGTGCACCCTTCAAAGGATGAAGTACTTGGGAAGATAAGCCTACCAATGACCCTCTTTGAGAAGAGGTTGGACCACAGGCCAGTTCATTCTCGTTGGTTCAATCTTGAGAGATTCGGTTTTGGAATGCTAGAAGGCGATAGAAGAAATGAGCTTAAATTTTCCAGCAGGATTCACATGAGAGTCTCCCTTGAAGGTGGATACCATGTCCTAGATGAGTCCACATTGTACACTAGTGATCAAAGACCAACAGCAAGACAACTATGGAAGCAACCTATTGGGATACTTGAAGTAGGCATCTTAGGAGCACAGGGGCTTCTCCCAATGAAGATGAGAGATGGCCGAGGAAGCACTGATGCATACTGTGTTGCCAAGTATGGTCAGAAATGGGTCCGAACTCGAACACTTTTGGACACTTTCAGTCCTAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTGATAACATTGGGAGTTTTTGACAACTGCCATCTTGGTGGAGGAGAAAATGGAAGTGCTGCTCGAGATTCACGAATTGGAAAGGTAAGGATTCGGTTATCAACACTTGAAGCCAATAGAATCTACACCAATTCTCACCCTCTACTTGTTTTACACCCACATGGTGTTAAGAAGATGGGGGAGCTTCAGTTAGCAGTGAGGTTCACTGCACTCTCATTAGCTAATATGGTTCACATCTATGGCCAACCCTTGCTCCCCAAGATGCATTACTTGCATCCTTTCACAGTTAACCAAATAGACAACTTAAGATACCAAGCCATGAACACTGTGGCAGCGAGGCTAGGCCGAGCTGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGCGCCCCACCCCGCCTCTGAGGAAAGAGGTGGTGGAGTACATGCTGGATGTTGATTCCCATATGTGGAGCATGAGAAGAAGCAAGGCTAACTTCTTTCGCATCATGTCACTTTTCTCTGGTGTGATGACACTGGGAAGATGGTTGAATGATGTTTGCCATTGGAAGAACCATGTTACATCAGTCCTAGTTCACATTCTTTTCCTGATACTAATATGGTACCCAGAACTAATACTGCCAACTGTGTTTCTCTACATGTTCTTGATTGGTCTTTGGAACTACAGGTTCAGGCCTAGGCACCCACCTCACATGGACACCAAATTGTCATGGGCTGAAGCCGTGCACCCTGACGAACTTGACGAAGAGTTTGACACATTCCCCACTTCTAGAACGCAGGATGTAGTGCGAATGAGGTATGACAGGCTTAGGACTGTGGCAGGTAGGATTCAAACAGTTGTTGGGGACATAGCTACACAAGGGGAGAGGTTTCAGTCTCTATTGAGCTGGAGAGACCCCAGAGCAACCAGCCTCTTTGTGGTGTTCAGCTTTTGTGCAGCTGTGGTTCTCTATGCAACACCATTCAAAGTGGTGGCTCTGGTCACAGGCTTATACTTCTTGCGACATCCGAGGTTTAGGAGCAAGATGCCTTCTGTCCCAAGTAATTTCTTCAAGAGGCTCCCAGCAAGAACAGATAGTTTACTGTGA 3678 0.4342 MKLVVEVINAHDLMPKDGEGSANPFVEVDFENQLSRTRTVPKNLNPTWNQKLVFHLDATKPYHRQTIEVSVYSERRVTPGRNFLGRVRIPCSNIVKQGEEVYQIFPLEKKWFLSSVKGEIGLKIYIASDSNSNSNIKPKPFSPIFPSEQENLPPSTPPQESSPSNKDTTLEAGPSEEVPAFDTPKASTEEAEVYSVAVPDCSTTEARSSGIDIDQEPQKESREPVLETVQQLDKHQVLQPQMISIKRRPQGTPITMHSVDPQSQSSYHENYNHNDTNSQPRISIKRRPQTQGTPFTMHSVDPQVQPSHGESYNHNDTNMQPRISIKRRPRAQGTPSPMHSINPQVHASHNDSYNLMGTRPQQPRLLVERQPQINTSLTMHRVNPQVQTSNDENYNLSDTNSPLGEQWPNGGAYGRRGWLSGSDRFTSTYDLVEQMFYLYVRIVKAKDLPPSTLTSSCDPYVEVKLGNYKGRTKHFEKKLNPEWNQVFAFSKDRIQSSVLEVFVKDKAMIGRDDYLGRVVFDLNEVPTRVPPDSPLAPQWYRLEDWREEGKLRGDIMLAVWMGTQADEAFSDAWHSDAATVYGEGVFNIRSKVYMSPKLWYLKVNVIEAQDVIPSERNRLPEVFVKAQVGCQVLTTKICPTRTTTPFWNEDLVFVASEPFEEQLTVTVEDRVHPSKDEVLGKISLPMTLFEKRLDHRPVHSRWFNLERFGFGMLEGDRRNELKFSSRIHMRVSLEGGYHVLDESTLYTSDQRPTARQLWKQPIGILEVGILGAQGLLPMKMRDGRGSTDAYCVAKYGQKWVRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGENGSAARDSRIGKVRIRLSTLEANRIYTNSHPLLVLHPHGVKKMGELQLAVRFTALSLANMVHIYGQPLLPKMHYLHPFTVNQIDNLRYQAMNTVAARLGRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPTPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGVMTLGRWLNDVCHWKNHVTSVLVHILFLILIWYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSRTQDVVRMRYDRLRTVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFVVFSFCAAVVLYATPFKVVALVTGLYFLRHPRFRSKMPSVPSNFFKRLPARTDSLL 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01936 1225 Coils Coil 940 944 - -
Cca04g01936 1225 CDD C2A_MCTP_PRT_plant 2 128 - -
Cca04g01936 1225 ProSiteProfiles C2 domain profile. 582 703 IPR000008 -
Cca04g01936 1225 Coils Coil 992 993 - -
Cca04g01936 1225 MobiDBLite consensus disorder prediction 136 224 - -
Cca04g01936 1225 Gene3D C2 domain 587 733 IPR035892 -
Cca04g01936 1225 MobiDBLite consensus disorder prediction 388 408 - -
Cca04g01936 1225 MobiDBLite consensus disorder prediction 243 358 - -
Cca04g01936 1225 Gene3D C2 domain 1 141 IPR035892 -
Cca04g01936 1225 Gene3D C2 domain 433 579 IPR035892 -
Cca04g01936 1225 ProSiteProfiles C2 domain profile. 746 872 IPR000008 -
Cca04g01936 1225 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 3 119 - -
Cca04g01936 1225 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 992 1225 - -
Cca04g01936 1225 Gene3D C2 domain 738 895 IPR035892 -
Cca04g01936 1225 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 763 896 IPR035892 -
Cca04g01936 1225 Pfam Plant phosphoribosyltransferase C-terminal 1070 1225 IPR013583 -
Cca04g01936 1225 Pfam C2 domain 599 705 IPR000008 -
Cca04g01936 1225 Pfam C2 domain 763 874 IPR000008 -
Cca04g01936 1225 Pfam C2 domain 437 540 IPR000008 -
Cca04g01936 1225 Pfam C2 domain 2 106 IPR000008 -
Cca04g01936 1225 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Cca04g01936 1225 CDD C2B_MCTP_PRT_plant 437 563 - -
Cca04g01936 1225 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 992 1225 - -
Cca04g01936 1225 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 3 119 - -
Cca04g01936 1225 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 384 945 - -
Cca04g01936 1225 ProSiteProfiles C2 domain profile. 419 540 IPR000008 -
Cca04g01936 1225 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 128 IPR035892 -
Cca04g01936 1225 SMART C2_3c 437 534 IPR000008 -
Cca04g01936 1225 SMART C2_3c 2 103 IPR000008 -
Cca04g01936 1225 SMART C2_3c 600 700 IPR000008 -
Cca04g01936 1225 SMART C2_3c 764 871 IPR000008 -
Cca04g01936 1225 MobiDBLite consensus disorder prediction 388 406 - -
Cca04g01936 1225 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 437 576 IPR035892 -
Cca04g01936 1225 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 599 754 IPR035892 -
Cca04g01936 1225 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 384 945 - -
Cca04g01936 1225 CDD C2D_MCTP_PRT_plant 764 891 - -
Cca04g01936 1225 CDD C2C_MCTP_PRT_plant 600 752 - -
Cca04g01936 1225 MobiDBLite consensus disorder prediction 335 358 - -
Cca04g01936 1225 MobiDBLite consensus disorder prediction 255 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01936 Cca-Chr4 37711639 37715635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01936 2 318 Lipid Metabolism Gene Families AT5G48060 38.679 9.27e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01936 - - gmx:100816204 2154.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01618 10 27860411 27862807 Cca04g01936 04 37711639 37715635 ECH
Cca02g00769 02 20049528 20052239 Cca04g01936 04 37711639 37715635 ECH
Cca03g02011 03 40228949 40232765 Cca04g01936 04 37711639 37715635 ECH
Cca04g01936 04 37711639 37715635 Cca04g01936 04 37711639 37715635 ECH