Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01935 ATGGTTCGCTCCCATGGCGTTACCCTCGTTAACCGCCTTGCTCGTCGATCTTTCCGTGATGCCAACAACTCTGTATGTCAAGCAGTGTTCCGACAGGGTTATAGGACATTGAGCTTTGGGCCTTGCAATTCATCTAGAGTTATTGGTAGTTTTGCCTCCAATGTTGGAGATGGTGTTAATTTGAAGAATTGTTTGCTATTGGGAGCGGCAAATAAATATTGGGGGGCATCTAGATCAATTCATGGCTCGGCATCATTGGCAAGAGACTATTATGATGTTCTTGGTGTGAGTAAGAATGCAAGTTCTGCTGAAATAAAGAAAGCTTACTATGGGCTTGCAAAAAAGCTCCATCCAGATACAAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGATTTTGAAAGACGAGGATAGGCGTCAACAATATGATCAGCTTGGCCATGATGCTTATGTAAACCAACAAAGCACTGGTTTCGGAGGTGAAGGTGGCTTTAATCCTTTCGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTCTTCCATCAGAATATTGGTGGCGAGGATGTGAAGACTTTTATAGAACTATCTTTTATGGAAGCTGTACAAGGGTGCACCAAAACTTTGACATTTCAAACTGATCTTCTTTGTAATGCTTGTGGTGGGAGTGGTGTTCCTCCAGGTACAAGACCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTGTTATTTGTACAAGCCGGCATATTCAAAATGGAGAGTACTTGTGGCACCTGTAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAATCTTGCAGGGGTGCAAAGGTTATCAAAGGAACGAAGTCAGTCAAGTTGGATATTATGCCTGGGATAGACAGCAACGAGACCATAAAGGTATATAGAAGTGGTGGAGCAGATCCTGACGGAGATCACCCAGGTGATCTTTATGTTACTATCAAGGTTAGAGAAGACCCTGTTTTTCGCAGAGAAGGATCCGATATTCATGTAGATGCTGTTTTAAGTATCACTCAGGCGATTTTGGGTGGAACTATTCAAGTCCCTACTCTTTCAGGAGATGTTGTTCTCAAGGTCCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACAAACCTGACACAGAGACAACGTGAATTAATTGAAGAGTTTGCCAAGGAAGAACAAGAAGAATTTGATAAACGGAGAGCTGCTTCAGCTTCTGGTTGA 1332 0.4197 MVRSHGVTLVNRLARRSFRDANNSVCQAVFRQGYRTLSFGPCNSSRVIGSFASNVGDGVNLKNCLLLGAANKYWGASRSIHGSASLARDYYDVLGVSKNASSAEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSMAYEILKDEDRRQQYDQLGHDAYVNQQSTGFGGEGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKTLTFQTDLLCNACGGSGVPPGTRPETCKRCKGSGVLFVQAGIFKMESTCGTCKGTGKIVSNFCKSCRGAKVIKGTKSVKLDIMPGIDSNETIKVYRSGGADPDGDHPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLSGDVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVNIPTNLTQRQRELIEEFAKEEQEEFDKRRAASASG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01935 443 Pfam DnaJ domain 89 151 IPR001623 -
Cca04g01935 443 Hamap Chaperone protein DnaJ [dnaJ]. 86 438 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca04g01935 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 422 IPR008971 GO:0006457|GO:0051082
Cca04g01935 443 Pfam DnaJ central domain 225 285 IPR001305 GO:0031072|GO:0051082
Cca04g01935 443 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Cca04g01935 443 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 30 443 - -
Cca04g01935 443 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 443 - -
Cca04g01935 443 CDD DnaJ 89 143 IPR001623 -
Cca04g01935 443 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Cca04g01935 443 PRINTS DnaJ domain signature 91 109 IPR001623 -
Cca04g01935 443 PRINTS DnaJ domain signature 109 124 IPR001623 -
Cca04g01935 443 PRINTS DnaJ domain signature 126 146 IPR001623 -
Cca04g01935 443 PRINTS DnaJ domain signature 146 165 IPR001623 -
Cca04g01935 443 CDD DnaJ_zf 225 285 IPR001305 GO:0031072|GO:0051082
Cca04g01935 443 SUPERFAMILY Chaperone J-domain 88 190 IPR036869 -
Cca04g01935 443 Gene3D - 197 330 - -
Cca04g01935 443 Gene3D - 217 289 - -
Cca04g01935 443 SMART dnaj_3 88 146 IPR001623 -
Cca04g01935 443 CDD DnaJ_C 196 414 - -
Cca04g01935 443 Pfam DnaJ C terminal domain 201 411 IPR002939 -
Cca04g01935 443 ProSiteProfiles Zinc finger CR-type profile. 212 290 IPR001305 GO:0031072|GO:0051082
Cca04g01935 443 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 287 IPR036410 -
Cca04g01935 443 Gene3D - 332 440 - -
Cca04g01935 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 333 IPR008971 GO:0006457|GO:0051082
Cca04g01935 443 Gene3D DnaJ domain 86 196 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01935 Cca-Chr4 37696119 37706216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01935 82 151 C2H2 Transcription Factor Family AT1G74250 41.333 1.53e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01935 K03686 - gmx:100799735 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01935 04 37696119 37706216 Cca04g01935 04 37696119 37706216 ECH