Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01928 ATGGCTCAGTGGCAGGGTGATGCTGACGAGGGCATCGACTACATTTTCAAGATTGTCACGATTGGGGACTCGGGGGTTGGAAAATCTCAGCTTTTGAATCGCTTTGTGAAAAACGAATTCCACATGAAATCCAAACCCACAATTGGAGTTGAGTTTCTGACTAGGACGGTCGTCATGGATCATAAACTAGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTACCAAGCAATTACAACTGCGTATTACCGGGGTGCAACTGGTGCGTTACTAGCATACGACATAACCAATCAGCAAACCTTTGACCATGTTGAAAAGTGGTTGGATGAGCTCCGGATACATGCGGATAAAAATATACTTGTCATGCTTGTTGGCAACAAATCTGACCTGAGTTCTATTCGAGCAGTGCCTATTGAGGTAGCCAGAGACTTTGCAAAGCAGGAAGGTCTCTTCTTTCTGGAGACATCGGCACTTGACTCCACCAATGTGGAATCAGCTTTCCTTGGTCTCCTCTCTCAAGTATACAGAACTGTCAGTAGGAAGCACATCCCTGTGGATGGACCTGAATCAAATTGGGATAAAGTAAACCTTGAACTTGATGGAACAAAAATTAGTGTCCCATTGCAAGAACCTGAATGCCAGAATGCTAATAGGAGATTCAATTGTTGCAGTATTATTTAG 687 0.441 MAQWQGDADEGIDYIFKIVTIGDSGVGKSQLLNRFVKNEFHMKSKPTIGVEFLTRTVVMDHKLVKAQIWDTAGQERYQAITTAYYRGATGALLAYDITNQQTFDHVEKWLDELRIHADKNILVMLVGNKSDLSSIRAVPIEVARDFAKQEGLFFLETSALDSTNVESAFLGLLSQVYRTVSRKHIPVDGPESNWDKVNLELDGTKISVPLQEPECQNANRRFNCCSII 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01928 228 SMART rho_sub_3 18 179 IPR001806 GO:0003924|GO:0005525
Cca04g01928 228 PRINTS Transforming protein P21 ras signature 16 37 - -
Cca04g01928 228 PRINTS Transforming protein P21 ras signature 39 55 - -
Cca04g01928 228 PRINTS Transforming protein P21 ras signature 57 79 - -
Cca04g01928 228 PRINTS Transforming protein P21 ras signature 119 132 - -
Cca04g01928 228 PRINTS Transforming protein P21 ras signature 154 176 - -
Cca04g01928 228 ProSiteProfiles small GTPase Rho family profile. 9 184 - -
Cca04g01928 228 SMART ran_sub_2 21 222 - -
Cca04g01928 228 SMART ras_sub_4 16 179 - -
Cca04g01928 228 PANTHER - 1 226 - -
Cca04g01928 228 SMART rab_sub_5 16 179 - -
Cca04g01928 228 CDD Rab11_like 13 177 - -
Cca04g01928 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 184 IPR027417 -
Cca04g01928 228 PANTHER RAB GTPASE-LIKE PROTEIN G3A 1 226 - -
Cca04g01928 228 ProSiteProfiles small GTPase Ras family profile. 10 228 IPR001806 GO:0003924|GO:0005525
Cca04g01928 228 Gene3D - 9 202 IPR027417 -
Cca04g01928 228 TIGRFAM small_GTP: small GTP-binding protein domain 14 169 IPR005225 GO:0005525
Cca04g01928 228 ProSiteProfiles small GTPase Rab1 family profile. 11 225 - -
Cca04g01928 228 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01928 Cca-Chr4 37571669 37573804 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01928 K07904 - gmx:100789008 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01928 04 37571669 37573804 Cca04g01928 04 37571669 37573804 ECH