Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01920 ATGGTTTCTGCTGTTAGTTTCAGTCAAAGCCTCGTTTTCTTGAAGCCATCATCTCAGGTGAAGTGTTGCACACAGTCACAGAACAAAGCAGCCACATCACATATTCAAACGAAGAAACGGTGCTTGAGATGCAACACCCTTTACTCAGATCAAGATAATTCTCCACATGCTTGCTCCTTCCACGGCCACACCAATGAGCACAAGAAGGATGTTAGTTTTTTAACCAGCTTACCAGGAGCATCTCAAAGGCTACAAATTCACAGTGCTGATCTCAGCAATCCAGAAAGTTTCAATGCAGCCATTGAAGGGTGCATTGGAGTTTTCCATGTAGCTACCCCAGTTGACTTTGAATTAGATGAACCTGAGGAGGTAGTGACCAAAAGATCCATTGATGGTGCACTTGGCATTTTGAAGGCATGCCTCAATTCCAAGACTGTGAAACGAGTTGTTTACACCTCTAGTGCCTCTGCTGCGGCTTTCAATAACAAGGAAGTGTTGGATGAAAGCTGTTGGAGCGACGTGGATAGTCTTAGAGCTgCTTCAAAGCCATTTGGTTGGTCCTATGCGGTTTCAAAGACATTGACAGAAAAGGCAGTGCTTGAATTTGGAGAACAAAATGGATTGGATGTTGTCACACTAATTCCAACTTTTGTGTTTGGACCCTTCATTTGTCCAAAGCTTCCTAGCTCGGTTCAAGCTTCCTTGTGTTTTGCATTTGGAGGAAAAAGTGCCTTTGGTTTCATAATTCAAACACCTATGGTGCATGTAGATGACGTGGCTAGAGCACATATATTTCTGCTGGAACATCCTAATCCAAAAGGGAGGTATAGTTGTTCACAGTGTCTGGTAACTTTTGAAAGAATCTCTGAACTTGTTTCTGCCAAATATCCAGAATTTCAACTAGAGACAGTAGACTCGTCCAAGCAAATTGAAGGTATCAAGATACAAGATTTGTCTTCAAAGAAACTGAAAGATGCTGGATTTGTGTTCATGTACGGACTTGAGGAAATGCTTGATGATGCAATCCAATGCTGCAAACAAAAAGGGTTACCTGTGAGGTAG 1062 0.4218 MVSAVSFSQSLVFLKPSSQVKCCTQSQNKAATSHIQTKKRCLRCNTLYSDQDNSPHACSFHGHTNEHKKDVSFLTSLPGASQRLQIHSADLSNPESFNAAIEGCIGVFHVATPVDFELDEPEEVVTKRSIDGALGILKACLNSKTVKRVVYTSSASAAAFNNKEVLDESCWSDVDSLRAASKPFGWSYAVSKTLTEKAVLEFGEQNGLDVVTLIPTFVFGPFICPKLPSSVQASLCFAFGGKSAFGFIIQTPMVHVDDVARAHIFLLEHPNPKGRYSCSQCLVTFERISELVSAKYPEFQLETVDSSKQIEGIKIQDLSSKKLKDAGFVFMYGLEEMLDDAIQCCKQKGLPVR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01920 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 349 IPR036291 -
Cca04g01920 353 CDD FR_SDR_e 63 328 - -
Cca04g01920 353 Pfam NAD dependent epimerase/dehydratase family 66 272 IPR001509 -
Cca04g01920 353 Gene3D - 58 350 - -
Cca04g01920 353 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 66 343 - -
Cca04g01920 353 PANTHER VESTITONE REDUCTASE-LIKE 66 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01920 Cca-Chr4 37242686 37247332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01920 81 351 Miscellaneous Gene Families AT4G27250 34.146 7.14e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01920 - K13265 gmx:100796029 498.434