Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01918 ATGGCAGATCCTCAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCTTCTTCTCAACCCTACCCTCTTGCTAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGAGCCTCATCTTCTTATTTGGctcctcctccttcttcccctcctcTCAGAGAGGCCCTTCCTCTGATAAACAAGATAAGCTTCACACATCAGCAGCAAAACGAACCCTCAAATGTTACGGAAGAGAAAGAAGAGGACAATAACAAACATGAAAGTGCTGAAGATGGTGATGAGGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCAAGAATGGATATTTCTTCTGATCTGGGGTCATCAAGGGTGGTCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAATATGATTTCTGAACAGCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATTCAGATGTTCCTCGAGAAAGCCTGA 585 0.4068 MADPQSNLFHEWFNFMLLHPHYSSSQPYPLANYSNNRFGIQLQGASSSYLAPPPSSPPLREALPLINKISFTHQQQNEPSNVTEEKEEDNNKHESAEDGDEETVTVALHIGLPRMDISSDLGSSRVVSTCMEMGEKEEVNMISEQPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQIQMFLEKA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01918 194 MobiDBLite consensus disorder prediction 73 102 - -
Cca04g01918 194 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 190 - -
Cca04g01918 194 MobiDBLite consensus disorder prediction 80 102 - -
Cca04g01918 194 PANTHER ZINC FINGER PROTEIN WIP2 1 190 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01918 Cca-Chr4 37201426 37202425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01918 1 190 C2H2 Transcription Factor Family AT1G51220 37.019 5.54e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g01918 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01918 - - ccaj:109811201 367.081