Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01917 ATGGTTGATCAGGTTCAGCATCCCAGAATCATGGAGAAGGTTGCAGGCCAGTTGCATCTCCGAACTGGTCTTCCTTTGTACAAGCAGAGGCGCTCATTTGGGAATTACTCAAATGCCGCATTGCAGTATCCGGTAATGCCAGCATACAGTGCTGCAACCGATATCTGCACTTTATCAACCTCCCCTGTGTTTGCTGCAGCTCCGGCTGAGAAAGGACACTTCCTTATTGACTTTCTCATGGGTGGAGTTTCAGCTGCAGTGTCCAAAACTGCTGCGGCTCCCATTGAACGAGTTAAACTCTTGATCCAGAACCAGGATGAGATGATCAAAGCTGGTAGACTCTCTGAACCATACAAGGGTATTGGTGATTGTTTTAAGAGAACAATGCAGGAAGAGGGTGTTGTTTCCCTATGGAGAGGTAACACTGCAAATGTCATCCGTTATTTCCCAACTCAGGCTCTGAACTTTGCATTCAAGGACTACTTCAAGAGGCTTTTCAATTTCAAGAAGGATAAGGATGGTTACTGGAAATGGTTTGCTGGTAACTTGGGCTCAGGAGGTGCTGCTGGTGCCTCATCCCTTTTGTTTGTCTACTCCCTTGACTATGCTCGTACCCGTCTGGCCAATGATGCCAAGGCTGCAAAGAAGGGTGGAGAAAGGCAATTCAATGGTCTTGTTGATGTCTACAAGAAGACATTGGCATCGGATGGTGTTGCTGGTCTTTACCGTGGCTTCAACATTTCCTGTGTTGGAATCATTGTGTACCGTGGTCTCTACTTTGGAATGTATGATTCCTTGAAGCCAGTTCTCTTAACTGGCTCTTTGCAGGATAGCTTTTTCGCTAGTTTTGCCCTTGGATGGCTTATCACCAATGGTGCAGGTTTAGCCTCATACCCAATTGACACTGTTAGAAGAAGGATGATGATGACATCTGGTGAAGCTGTGAAGTACAAGAGCTCTATGGATGCATTTACACAAATCCTCAAGAATGAGGGTGCCAAGTCTTTGTTTAAGGGAGCTGGTGCTAACATCCTCCgtgctgttgctggtgctggtgtgcttgctggtTATGACAAGTTGCAGGTGATAGTGTTCGGAAAGAAGTATGGTTCCGGTGGTGCTTAA 1125 0.4471 MVDQVQHPRIMEKVAGQLHLRTGLPLYKQRRSFGNYSNAALQYPVMPAYSAATDICTLSTSPVFAAAPAEKGHFLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFKRTMQEEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYKKTLASDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGSLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFTQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01917 374 ProSiteProfiles Solute carrier (Solcar) repeat profile. 277 363 IPR018108 -
Cca04g01917 374 ProSiteProfiles Solute carrier (Solcar) repeat profile. 177 269 IPR018108 -
Cca04g01917 374 PRINTS Mitochondrial carrier protein signature 77 90 IPR002067 GO:0055085
Cca04g01917 374 PRINTS Mitochondrial carrier protein signature 90 104 IPR002067 GO:0055085
Cca04g01917 374 PRINTS Mitochondrial carrier protein signature 140 160 IPR002067 GO:0055085
Cca04g01917 374 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
Cca04g01917 374 PRINTS Mitochondrial carrier protein signature 242 260 IPR002067 GO:0055085
Cca04g01917 374 PRINTS Mitochondrial carrier protein signature 286 308 IPR002067 GO:0055085
Cca04g01917 374 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 2 374 - -
Cca04g01917 374 Gene3D Mitochondrial carrier domain 75 370 IPR023395 -
Cca04g01917 374 SUPERFAMILY Mitochondrial carrier 73 359 IPR023395 -
Cca04g01917 374 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 2 374 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01917 374 ProSiteProfiles Solute carrier (Solcar) repeat profile. 72 165 IPR018108 -
Cca04g01917 374 Pfam Mitochondrial carrier protein 176 272 IPR018108 -
Cca04g01917 374 Pfam Mitochondrial carrier protein 278 363 IPR018108 -
Cca04g01917 374 Pfam Mitochondrial carrier protein 73 169 IPR018108 -
Cca04g01917 374 PRINTS Adenine nucleotide translocator signature 74 86 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01917 374 PRINTS Adenine nucleotide translocator signature 118 139 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01917 374 PRINTS Adenine nucleotide translocator signature 151 163 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01917 374 PRINTS Adenine nucleotide translocator signature 177 190 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01917 374 PRINTS Adenine nucleotide translocator signature 282 298 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01917 Cca-Chr4 37078384 37081698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01917 1 374 Antiporters AT5G13490 80.307 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01917 K05863 - gmx:100793257 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01649 10 28807719 28811515 Cca04g01917 04 37078384 37081698 ECH
Cca04g01917 04 37078384 37081698 Cca04g01917 04 37078384 37081698 ECH