Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01916 ATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGACGCTGGGTTCCCCTATGCTGTTAATGAAAATTTCGTTGATTTCTTTCAAGGATTCACGCATGTCCCCGTGAATTATGCCTTTGCTGGCTCAATGCCTGATCAGGAAAGTGTCTATTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCAAGAATGGAGATCGATAGGACTGAGTGGGAGTACCCTTCAACAATGACCGCCGTGGAACCAGCTACAACAGAGTCTCCACCTAGAAGAGATGGAGTCACAAGCATGCAGACTATTCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAATAGTAGTAGCCAGGTCTTGTGGCAAGACAACATTGATCCTGATAATATGACTTATGAGGAACTGCTGGACCTCGGGGAGGCAGTTGGGACGCAAAGCCGAGGTCTTTCCCAAGATCTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGCTTATTCAAACGGAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGTCATGTCTATCATGGTGAATGCATCACCAAGTGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTCGGCGAGGAATCAACGCATTAG 741 0.4372 MNDGRQMGVHYVDAGFPYAVNENFVDFFQGFTHVPVNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRTEWEYPSTMTAVEPATTESPPRRDGVTSMQTIPEECSPNHHESNSSSQVLWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQDLIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTH 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01916 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 246 - -
Cca04g01916 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Cca04g01916 246 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Cca04g01916 246 SMART ring_2 195 235 IPR001841 -
Cca04g01916 246 SUPERFAMILY RING/U-box 194 240 - -
Cca04g01916 246 Pfam Ring finger domain 194 236 IPR001841 -
Cca04g01916 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01916 Cca-Chr4 37047490 37055507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01916 9 246 C3H Transcription Factor Family AT3G63530 56.485 1.25e-99 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01916 K19045 - gmx:100792734 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01916 04 37047490 37055507 Cca04g01916 04 37047490 37055507 ECH