LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g01903	ATGAGTTATTATGGTGAAGAAAATGATAGAGTGAGTGGTCTTTATGAGGTTTCAGTGAGAGGTAGTGTGTGCGAGTTAGAGTCTCTAATAGTGCGAGACCCTCTTATCTTACACAAGCTTTCGTTGAGAAGCTTCACCGAAACTCCCTTACACGTCTCAGCTTTACTTGGTCACTTTGACTTCACCAAGTGTCTTCTCTCTCACAAACCTCAACTGGCCCTTGAGTTAGACCACTCCAAACGCACCCCTCTTCATCTGGCTTCAGCTGAGGGCCATGCAGAGATTGTGCACGTGCTGTTGCAAGCGTGTGAACACGCGTGCTTGATGAGTGACCAAGATGGGAGAATCCCTCTCCACTATGCAGCAATGAGAGGACGAAGAGAGGTGGCAAGAGAGTTGATTCGAGCCAAGCCTGAGTCAGTGATGGTGCTTGATGGCTCGGGAAAAACTATGTTGCACCTTTGTGTTGAACATAATCACTTGGACACCCTCAAAACATTAGTGCAAGAGGGCCATGTCGGCCACAATTTTCTAAACTTTGGAGACTTCAATCGTGGGAATACCCTCCTCCATTTGGCTGTTATGTTCAAGCAAATTCAGACCGTAAGGTACTTACTTTCGATACCCAAAATAAGAGAAGAAGGGAATATTAAGAACAATATGGGTTATACTGCTTTGGACATGCTAGAGCACGGTACAAGAGACTTTAAAAGTCTTCAAATGCAACTCATGTTGATGGACGCTGGCATCATCAAGAACAATGAACATAATAACCAAGTAGACCACACACTATCAACAACCATAACTGTTGTTCCACCAATGACAATAGCTGATCCAAATGCAAAGTGTTGGAGCAAGTTTTTGAAGGGTATGAATAAGTTCTTACAACATAAGAGTGGTAGGTTGGAAGAAATGAGAGGCATGCTGAGTTTGGTAGCTACAATGATCTCAAGCATGACCTTTAATGTTGTGATGAACCCACCAGGTGGTCATATGAGCCCAGCAACATTTTATATGACACGAGAAATAACTACGAGTTTCATAACGTACAACACTATTGCTTTCATTGCATCGCTTAGTGTTACTCTCTTACTTGTGAGTGGTGTCCCCTTAAAGAACGAAGTCACCATGGGGATATTATCAATAGGCACAGgtgaaactcatcaagatattgatgatgttggtgacgagacttag	1197	0.4169	MSYYGEENDRVSGLYEVSVRGSVCELESLIVRDPLILHKLSLRSFTETPLHVSALLGHFDFTKCLLSHKPQLALELDHSKRTPLHLASAEGHAEIVHVLLQACEHACLMSDQDGRIPLHYAAMRGRREVARELIRAKPESVMVLDGSGKTMLHLCVEHNHLDTLKTLVQEGHVGHNFLNFGDFNRGNTLLHLAVMFKQIQTVRYLLSIPKIREEGNIKNNMGYTALDMLEHGTRDFKSLQMQLMLMDAGIIKNNEHNNQVDHTLSTTITVVPPMTIADPNAKCWSKFLKGMNKFLQHKSGRLEEMRGMLSLVATMISSMTFNVVMNPPGGHMSPATFYMTREITTSFITYNTIAFIASLSVTLLLVSGVPLKNEVTMGILSIGTGETHQDIDDVGDET	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g01903	398	Gene3D	-	10	243	IPR036770	-
	Cca04g01903	398	ProSiteProfiles	Ankyrin repeat profile.	147	171	IPR002110	GO:0005515
	Cca04g01903	398	SMART	ANK_2a	45	74	IPR002110	GO:0005515
	Cca04g01903	398	SMART	ANK_2a	79	109	IPR002110	GO:0005515
	Cca04g01903	398	SMART	ANK_2a	113	143	IPR002110	GO:0005515
	Cca04g01903	398	SMART	ANK_2a	185	214	IPR002110	GO:0005515
	Cca04g01903	398	SMART	ANK_2a	147	177	IPR002110	GO:0005515
	Cca04g01903	398	Pfam	Ankyrin repeats (3 copies)	111	171	IPR002110	GO:0005515
	Cca04g01903	398	Pfam	Ankyrin repeats (3 copies)	43	101	IPR002110	GO:0005515
	Cca04g01903	398	ProSiteProfiles	Ankyrin repeat region circular profile.	147	171	-	-
	Cca04g01903	398	Pfam	Ankyrin repeat	186	206	IPR002110	GO:0005515
	Cca04g01903	398	ProSiteProfiles	Ankyrin repeat profile.	113	135	IPR002110	GO:0005515
	Cca04g01903	398	PANTHER	HOMEOBOX PROTEIN WARIAI	15	368	-	-
	Cca04g01903	398	Pfam	Domain of unknown function	301	369	IPR026961	-
	Cca04g01903	398	ProSiteProfiles	Ankyrin repeat region circular profile.	113	135	-	-
	Cca04g01903	398	PANTHER	ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE	15	368	-	-
	Cca04g01903	398	SUPERFAMILY	Ankyrin repeat	43	228	IPR036770	-
	Cca04g01903	398	ProSiteProfiles	Ankyrin repeat profile.	79	101	IPR002110	GO:0005515
	Cca04g01903	398	ProSiteProfiles	Ankyrin repeat region circular profile.	79	101	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g01903	Cca-Chr4	36550255	36554934	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g01903	21	330	Miscellaneous Gene Families	AT4G10720	27.273	2.01e-25	105

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g01903	-		-	gmx:100796407	451.825