Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01899 ATGGGAAAGAAGAACAAACTGAAGGAAAATGGAGGCAAAGAGCATTGCGCCTCAACACTTTTTGTCTCCAATTTGCCCTATACCTTTACCAATTCTCAGCTGGAGGAGACGTTCAGTGAGGTTGGACCTGTCAGGCGTTGCTTCATGGTCACACAGAAAGGGTCGGCCCAGCATCGTGGTTTCGGATATGTCCAATATGCCGTTGAAGAAGATGCTAACCGTGCTATTGAGCTGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGTAGTGAAGCATGCAATGCCTCGTCCTCCCCGCGAAGAAAGAAATTCAAAACCAAATCAAGTGGGCAAGACAGATGATCTCACAAAGCTAAAAGATGATGATGAAGATGGTAGATCATCTGGAGCAGAAAAGCATGTTTCAGTTTTGAAGGAAGAAGAAGTACAAGTCACAAATAAACAAAAAAACTCAGGGAAGCCCATGGAAACGAAAAAATCAGCTCTTT 490 0.4388 MGKKNKLKENGGKEHCASTLFVSNLPYTFTNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQYAVEEDANRAIELKNGSSVGGRKIVVKHAMPRPPREERNSKPNQVGKTDDLTKLKDDDEDGRSSGAEKHVSVLKEEEVQVTNKQKNSGKPMETKKSAL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01899 163 MobiDBLite consensus disorder prediction 79 163 - -
Cca04g01899 163 SUPERFAMILY RNA-binding domain, RBD 18 106 IPR035979 GO:0003676
Cca04g01899 163 SMART rrm1_1 19 92 IPR000504 GO:0003723
Cca04g01899 163 MobiDBLite consensus disorder prediction 94 147 - -
Cca04g01899 163 MobiDBLite consensus disorder prediction 148 163 - -
Cca04g01899 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Cca04g01899 163 CDD RRM1_RBM28_like 19 97 - -
Cca04g01899 163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Cca04g01899 163 PANTHER RNA BINDING PROTEIN 8 128 - -
Cca04g01899 163 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 8 128 - -
Cca04g01899 163 Gene3D - 2 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01899 Cca-Chr4 36468301 36470755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01899 17 123 Eukaryotic Initiation Factors Gene Family AT4G34110 34.821 1.35e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01899 K14573 - gmx:100794821 276.174