Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01898 ATGGCCTCTCCTCCCCCTTCCTCCGTTGTCAAGGAAGCGAAAGTGCTCATGGTTGGTGCTGGCGGAATTGGCTGCGAGCTTCTCAAGACTCTCGCTCTCTCCGGTTTCCCTGACATTCACATCATTGACATGGACACCATAGAAGTCAGTAACCTGAACAGACAATTTTTATTTCGACAATCTCATGTTGGACAATCCAAGGCTAAAGTTGCTAGGGATGCTGTTTTAAAATTTAGGCCCCACATAAACATTACACCATATCATGCAAATGTCAAAGATCCTGAATTCAATGTGGACTTCTTTAAGCAATTTAACGTCGTTCTAAATGGACTTGACAATCTAGATGCACGCCGACATGTGAATCGCCTGTGCTTGGCAGCTAATGTTCCTTTGGTTGAAAGTGGGACTACTGGATTCCTTGGACAGGTCACTGTACATGTCAAGGGAAGAACGGAGTGCTATGAGTGTCAGCCTAAACCAGCCCCCAAGACATATCCTGTCTGTACCATCACAAGTACCCCATCAAAGTTCGTTCACTGCATTGTGTGGGCTAAAGAACTACTTTTTGCTAAGTTATTTGGAGACAAGAATCAGGACAATGACTTAAATGTTCGATCAAGTGATGCTGCCAGCTCATCAGAAAATGTAGAGGATGTATTTGAACGCAGGAAAGATGAAGACATTGATCAATATGGAAGGAAAATTTTTGATCATGTGTTTGGGTATAACATTGAATTAGCTTTGTCTAATGAAGAGACATGGAAAAGTCGTAATAGACCAAAGCCTATATACAGCAAAGATGTCTTGTCTGATGAACTGGCTCAACAAAATGGAAATTTGGAGAAAAATTATGCATCTGATGATGAATTATCAGTTTCTTCCATGGCATCTTTGGGTATGAAGAACCCGCAGGATATTTGGACTCTCAAAGAAAATTCTAAAATATTTATTGAAGCATTGAGACTATTTTTTACAAAAAGGGAAAAGGAGATTGGCAATCTAAGCTTCGATAAAGATGACCAGTTGGCCGTAGAATTTGTTACTGCAGCTGCAAACATACGGGCTGCCTCCTTTGGCATCCCTTTGCACAGCCTTTTTGAAGCTAAAGGTATTGCTGGTAATATTGTGCATGCTGTTGCAACTACAAATGCTGTTATTGCCGGGTTGATTGTCATTGAAGCAATCAAAGTGCTGCAAAATGACATTAAAAATTATAGAATGACATATTGTCTGGAACATCCATCAAGAAACATGCTGCTTATGCCGGTGGAACCATTTGAACCTAACAAGTCTTGTTATGTCTGTTCTGAGACACCTTTATCACTTGAAATAAACACCAACCGTTCAAAGTTGAAAGACTTAGTCGAAAAAATTGTCAAGGCAAAGCTTGGTATGAACCTTCCTCTTATTATGTGTGCTTCAAACCTCCTTTATGAAGCTGGTGATGTTGAGGAAGACATGATTGCAATTTACGAGGCCAACCTTGAAAAGGTATGTTTGTTGTCTTTATTTTAA 1515 0.4013 MASPPPSSVVKEAKVLMVGAGGIGCELLKTLALSGFPDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPHINITPYHANVKDPEFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAANVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFAKLFGDKNQDNDLNVRSSDAASSSENVEDVFERRKDEDIDQYGRKIFDHVFGYNIELALSNEETWKSRNRPKPIYSKDVLSDELAQQNGNLEKNYASDDELSVSSMASLGMKNPQDIWTLKENSKIFIEALRLFFTKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLQNDIKNYRMTYCLEHPSRNMLLMPVEPFEPNKSCYVCSETPLSLEINTNRSKLKDLVEKIVKAKLGMNLPLIMCASNLLYEAGDVEEDMIAIYEANLEKVCLLSLF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01898 504 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 8 498 IPR045886 -
Cca04g01898 504 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 11 482 IPR035985 GO:0008641
Cca04g01898 504 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 442 497 IPR028077 -
Cca04g01898 504 CDD Uba2_SUMO 14 435 - -
Cca04g01898 504 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 8 498 - -
Cca04g01898 504 PIRSF SUMO_E1B 7 502 IPR030661 GO:0016925|GO:0019948
Cca04g01898 504 Gene3D - 7 108 IPR042449 -
Cca04g01898 504 Pfam Ubiquitin-activating enzyme, SCCH domain 297 369 IPR019572 -
Cca04g01898 504 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 163 374 IPR023318 -
Cca04g01898 504 Gene3D - 436 502 - -
Cca04g01898 504 Pfam ThiF family 10 433 IPR000594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01898 Cca-Chr4 36437206 36444457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01898 334 428 EF-hand Containing Proteins AT2G30110 35.000 1.53e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01898 K10685 - gmx:100794304 945.266