Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01874 ATGGCATCAAGTTATAATATATTCTTTGATGATAAACGGAGCAAAGCCGAGGTTGACCCTCCTCAAAATGAGGAGTCAGCAGATGTTGGTGAATTAGTAAATGATCCTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCTATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCAGCGGTATATATCCATATTACAGCAAGATAAAACATGAATCGCAATGTGCATATAGACCATACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCACATCTGAAAGATGACCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCACCGCTATGTTAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTACGGTTTATGGGTGATGATAATGAGGCGAAGAACTACAGCTACAGTTTAGAGGTAGGTGGAAATGGGAAGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGAGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGGATATGGCCCTCTTGTTTTCCGGGGATGACAATAAGGAGTTGAAGCTTAGGGTTACTGGTAGGATTTGGAAAGAACAGTGA 909 0.4367 MASSYNIFFDDKRSKAEVDPPQNEESADVGELVNDPALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCSGIYPYYSKIKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGKKMIWQGVPRSIRDSHRKVRDSFDGLIIQRDMALLFSGDDNKELKLRVTGRIWKEQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01874 302 CDD RING-HC_SIAHs 52 90 - -
Cca04g01874 302 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Cca04g01874 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 9 302 - -
Cca04g01874 302 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Cca04g01874 302 MobiDBLite consensus disorder prediction 13 35 - -
Cca04g01874 302 CDD Sina 168 296 - -
Cca04g01874 302 SUPERFAMILY TRAF domain-like 107 298 - -
Cca04g01874 302 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cca04g01874 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 162 IPR013083 -
Cca04g01874 302 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 9 302 - -
Cca04g01874 302 SUPERFAMILY RING/U-box 46 94 - -
Cca04g01874 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 106 IPR013083 -
Cca04g01874 302 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 295 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01874 Cca-Chr4 35676620 35682106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01874 2 302 C3H Transcription Factor Family AT2G41980 68.874 7.08e-159 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01874 K04506 - gmx:100793457 606.675