Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01865 ATGGCTGATGATGCCAGTAGCAATTGCAACAGCAATTCCCTCATCCACCACCCCACAAACTTCAAGGGTGGATGGCATGCTGCCATCTTCATCATATTTGTGGAATTCGCCGAGAGATTTGCATACCAAGGGTTGGCTAGTAACCTCATCCAATACCTCACAAATGTTCTGAATGAACCCATCACAGAAGCAGCCAAGGATGTGAACACATGGGTGGGAGCCTCCTCTCTCTTCCCTTTGCTTGGTGGCTTCATCGCTGATTCTTATCTGGGTCGCTTCAACACAATACTCGTCTCATCGCTCATTTACCTCGTGGGCATGATTTTCTTGACACTTTCAGTGTCGGTACTCAAACACAAGCTGCTCTTTTTCGTGGCACTTTATGTCCTCGCCATAGGCGACGGAGGTCACAAACCCTGTGTTCAGACCTTCGCCGCCGATCAATTCGACGAGGACACGCCCGAGGAGAAGGATGCCAAGAGTTCATTCTTCAACTGGTGGTACTTGGGGATTGTGGCTGGCTCAACTGCTTCTGTTTTCGTTGTGATATACCTTCAGGACAATGTTGGGTGGGGGGTGGGGTTGGGGGTGCTGGCAGGTGTGTTGGCTTTGGCATTGGCACTCTTCTTGTTGGGAATCAAAAGGTACAGAAAGGAAGGCCCAACAGGGAGCCCATTCACGAGGCTGGCCCAAGTTTTTGTTGCCGCGGCTCGCAAGTGGCGCGTGCAGTTCACGCATGGCCATGACAATTATTGCTACgaggaggaggaggaggaTCATGAGCCCCATCATCTCCATGTTCAACCCAAATTTCACACTTTGCTCCATACTCATCAATATAGACTTTTGGACAAGGCAGCGATCATTGATGAAATTGATGCCAAAAGCAAGACAAGAGACCCTTGGAGGCTATGTTCAGTGACACAAGTTGAGGAAGTGAAGCTTGTCCTTCGCTTGATTCCAATATGGCTAAGTTGCTTAATGTTCACTGTTGTACAAGCTCAAGTACACACATACTACATCAAGCAAGGTGCCACCATGTTGCGTTCCCTAGGGCCACATTTTCAAGTCCCTCCAGCATCACTTCAAGGCCTAGTTGGAGTCACAATCCTTTTAGCAGTGCCATTCTACGACCGAGTCTTCGTGCCACTGATGAGAAAATTCACAGGAAAGCCAACCGGGATCACAGTGCTGCAGAGAATCGGGGTTGGACTTTTCTTATCCATAGTCAACATGGTTGTGGCAGCACTCACGGAGGCCAAAAGGGTTAGTGTTGCAAGGGAGCATGGCCTAATAGATGACCCCAAAGCAGTGTTACCAATCAGCATATGGTGGATGCTTCCTCAGTACATGGTCACAGGGATGTCTGATGCATTCACAATTGTGGGGCTTCAGGAGCTGTTCTATGACCAAATGCCTGAGGCACTCAGGAGCTTGGGGGCTGCAGCATACATAAGCATTGTGGGGGTTGGAAGCTTTGTTGGCAACATAGTCATAGTTGTGGTGCAGGCCATAACATCTAGGGCTGGGGACAAGTGGCTAGGGGACAACATCAATAGGGCACACCTTGATTACTTTTACTGGGTACTGGCTGTTCTTAGTGCTGTTAACTTGTGTGTTTATGTGTGGCTTGCTAAGGTTTATGTGTACAAGAAAGTTGATGAGGGTCATCAAACAAGTCACCAAAACGGTTCTGGCCGCAACAAGTACAGATCTGGAGTGTAG 1725 0.4817 MADDASSNCNSNSLIHHPTNFKGGWHAAIFIIFVEFAERFAYQGLASNLIQYLTNVLNEPITEAAKDVNTWVGASSLFPLLGGFIADSYLGRFNTILVSSLIYLVGMIFLTLSVSVLKHKLLFFVALYVLAIGDGGHKPCVQTFAADQFDEDTPEEKDAKSSFFNWWYLGIVAGSTASVFVVIYLQDNVGWGVGLGVLAGVLALALALFLLGIKRYRKEGPTGSPFTRLAQVFVAAARKWRVQFTHGHDNYCYEEEEEDHEPHHLHVQPKFHTLLHTHQYRLLDKAAIIDEIDAKSKTRDPWRLCSVTQVEEVKLVLRLIPIWLSCLMFTVVQAQVHTYYIKQGATMLRSLGPHFQVPPASLQGLVGVTILLAVPFYDRVFVPLMRKFTGKPTGITVLQRIGVGLFLSIVNMVVAALTEAKRVSVAREHGLIDDPKAVLPISIWWMLPQYMVTGMSDAFTIVGLQELFYDQMPEALRSLGAAAYISIVGVGSFVGNIVIVVVQAITSRAGDKWLGDNINRAHLDYFYWVLAVLSAVNLCVYVWLAKVYVYKKVDEGHQTSHQNGSGRNKYRSGV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01865 574 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 82 106 IPR018456 GO:0006857|GO:0016020|GO:0022857
Cca04g01865 574 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 16 554 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca04g01865 574 Gene3D MFS general substrate transporter like domains 4 556 IPR036259 -
Cca04g01865 574 Pfam POT family 93 508 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca04g01865 574 PANTHER PROTEIN NRT1/ PTR FAMILY 5.4 16 554 - -
Cca04g01865 574 SUPERFAMILY MFS general substrate transporter 13 548 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01865 Cca-Chr4 35373540 35381676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01865 10 555 Organic Solute Cotransporters AT3G54450 56.284 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01865 K14638 - gmx:100791362 1003.82