Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01856 ATGCCAAATCAATATACAAACATCCCAAATCATCCTCATCATCACACACCAGAGCCGGAGTTTCCATCAAAGGAATCTCAATCTCAACATTCTCCCTATAAAATCTCCACAACATCATCAACACATTCAACTTCTTACACACACATTCTAATACTAAACAATAAAAAAAAAACACCCTCTAAACTCAACTCAATTAACCTTGTTCCAATGAACATGTTAGGCCTCAGAGACCTAGTTCTGATAGCTCCAAACCCTTCTCCACTTcaccaccatcaacaccaacaccaacaccaacccaTTTCAGCAGAACACCATTCCAACCTCCCTTTGCCTTCTCCAGCCTCTCTCAGCGTTGGTCTCGGCATTTTCCCTCTCCTCACCTTGCCACACACCAACGATGTTCATGTTCAAGTTCAAGACTGTGCCAACACCACGAACACCAACACCACCAACTACTGGAACCTCAAGATGTGTGGTGGTGGCTCAGAAGTGAATTCCGCAAGAAAAGGTGGTGTGATCGTGAACATGGAAGACGAGGGGAGCAACAATAGGCACGTGATGGAGAGTGATGAAAGTGGTGGCACCGAGTTTAGGGTGTGTCAGGATTGTGGCAATAGGGCCAAGAGAGATTGCACCTTCAGAAGGTGCAGGACTTGTTGCAAAGGACGTGGCTTTGATTGCATCACTCACGTGAAGAGCACGTGGGTACCTGCATCCCTAAGACGAGGCAGTGGTAGTGGTAATAATAGTGGTGGTGAAGACAATAATAGTGGTAGTGGTGATGGCAGTGCTTGCAAGAGAATGAGAATTTTAGGTTCTTCAAAGAATGTTGCTGCTACATCTCATAGCTCCACTTCTAATGCTACCCCAACAAAGAGCTTTAGCTTGGATACTAGCTCTTGTCAACAAGATGCTGGTTTCAAGCAGTGTTTGCCACGGCATGTTCAAGCACCTGCTGTGTTTAGGTGCCACAGAGTGTCTGCAATTGGGAGTGGTGAAGATGAGTTTGCCTACTTGGCCACGGTTCATATCAGTGGCCATGTGTTCAAGGGGTTTCTCTATGATCATGGTCCTGATGCCAGAAATGATGTGCTTAGTGTTTCAGAACTGCAACTAGGAAACAATGGAAGTGGAAAGAACAATAATAATAATAATGGGGAATGTTCTTCTGCAATTGGAGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGA 1215 0.437 MPNQYTNIPNHPHHHTPEPEFPSKESQSQHSPYKISTTSSTHSTSYTHILILNNKKKTPSKLNSINLVPMNMLGLRDLVLIAPNPSPLHHHQHQHQHQPISAEHHSNLPLPSPASLSVGLGIFPLLTLPHTNDVHVQVQDCANTTNTNTTNYWNLKMCGGGSEVNSARKGGVIVNMEDEGSNNRHVMESDESGGTEFRVCQDCGNRAKRDCTFRRCRTCCKGRGFDCITHVKSTWVPASLRRGSGSGNNSGGEDNNSGSGDGSACKRMRILGSSKNVAATSHSSTSNATPTKSFSLDTSSCQQDAGFKQCLPRHVQAPAVFRCHRVSAIGSGEDEFAYLATVHISGHVFKGFLYDHGPDARNDVLSVSELQLGNNGSGKNNNNNNGECSSAIGVPTSAYPASVC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01856 404 MobiDBLite consensus disorder prediction 1 40 - -
Cca04g01856 404 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 199 240 IPR006510 -
Cca04g01856 404 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 71 404 IPR007818 GO:0003700|GO:0006355
Cca04g01856 404 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 311 358 IPR006511 -
Cca04g01856 404 MobiDBLite consensus disorder prediction 238 263 - -
Cca04g01856 404 MobiDBLite consensus disorder prediction 84 106 - -
Cca04g01856 404 MobiDBLite consensus disorder prediction 22 40 - -
Cca04g01856 404 MobiDBLite consensus disorder prediction 239 262 - -
Cca04g01856 404 Pfam Domain of unknown function (DUF702) 199 359 - -
Cca04g01856 404 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 71 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01856 Cca-Chr4 34943699 34949449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01856 70 391 C2H2 Transcription Factor Family AT5G12330 39.394 1.17e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca04g01856 DUF702 1.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01856 - - ccaj:109819093 729.554