Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01852 ATGGAGCCCAAGCGACGCACCGTCCGCAGCCTCGTCTCGAAGCTCAGCTCCGTCTCCGAAGCAGCCCGCATGGACGCCCTCTGCCAGCTCCGCCTCATGTCGAAGCAAGACCCCGAAACCCGACCCATCATCGCCGAAGCAGGCGCAATCCCCTACATCGCAGAGACCCTCTACTCCTCCTCCCACCCCTCCCAAGAGAACGCCGCAGCCACACTCCTCAACCTCTCCATAACCCAAAAGGAACCCCTCATGGCGACACGTGGCGTCCTCGACGCCATCGCGCACGTGATCTCGCACCACAACACCACCTCCTCCCCCGCCGCCGTCCAGTCCGCATCCGCCGCCATTCACAGCCTCCTCTCCTCCGTGGACGAGTACCGCCCCCTCGTGGGGTCCAAGCGCGAGATCGTCTACGCGCTCGTCGACATCCTCCGCTGCCACGTGTCCTCCCCTCCGCGCACCATCAAGGACGCGCTCAAGGCTCTCTTCGCCATCGCCCTTCACCCGCTCAACCGCTCCACCATGATAAACCTCGGCGTCGTTCCCGCGCTTTTCTCCCTCCTCGTTAAGGACGGCAGGCTCGGCATCGTCGAGGACGCCACCGCCGTCGTCGCGCAGGTCGCCGCCTCCCCCGACGCCGCCGACGCCTTCCGCAAGGCCTCCGCCCTCCGCGTCCTCGCCGACCTCCTCGACCTCTCCACCGCCGCCACCATGCGCACCAAGGAGAACGCCGTCTCCGCGCTCCTCAATTTGGTGCGCTGCGGCGGCGACAAGGTCGCCGCCGACGTCCGAGACGCCGTCGCGTTCGGCGCGCTCGACGGCGTCGCCGACGTCAGGGACGGCGGGAGCAGCAAGGGGAAGAGCAAGGCCGCCGAGCTGTTGAGGCTCTTGCTCGGTGAAAGCCATGGCAATGGCGATGGCGATGGCGATGTTGCTTTGAATAGCGACACGTGTTCTTCTTTTGGTTCCTCGCGGAATCATGATTCGGAATGA 993 0.6586 MEPKRRTVRSLVSKLSSVSEAARMDALCQLRLMSKQDPETRPIIAEAGAIPYIAETLYSSSHPSQENAAATLLNLSITQKEPLMATRGVLDAIAHVISHHNTTSSPAAVQSASAAIHSLLSSVDEYRPLVGSKREIVYALVDILRCHVSSPPRTIKDALKALFAIALHPLNRSTMINLGVVPALFSLLVKDGRLGIVEDATAVVAQVAASPDAADAFRKASALRVLADLLDLSTAATMRTKENAVSALLNLVRCGGDKVAADVRDAVAFGALDGVADVRDGGSSKGKSKAAELLRLLLGESHGNGDGDGDVALNSDTCSSFGSSRNHDSE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01852 330 SUPERFAMILY ARM repeat 7 297 IPR016024 -
Cca04g01852 330 PANTHER U BOX DOMAIN-CONTAINING 2 308 - -
Cca04g01852 330 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 308 - -
Cca04g01852 330 SMART arm_5 168 209 IPR000225 GO:0005515
Cca04g01852 330 SMART arm_5 37 77 IPR000225 GO:0005515
Cca04g01852 330 SMART arm_5 210 253 IPR000225 GO:0005515
Cca04g01852 330 Gene3D - 2 299 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01852 Cca-Chr4 34662582 34664551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01852 8 297 U-box Gene Family AT1G23030 33.677 3.78e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01852 - - gmx:100787115 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01852 04 34662582 34664551 Cca04g01852 04 34662582 34664551 ECH