Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01850 atgaagaagagaatgatggaggagaaagaagagaatgataagaagCAATCTTGTGGCATGAAGGAAGAGTGCGTGAGGAAAGTAGGGTTTGGAAGGGGCGAAAGAGTGAAGAGAGACGAGTGGAGTGAAGGGGCGGTGTCAAGGCTCCTTGAGGCGTACGAGGCCAAATGGGTGCTGAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAGGACGTGGCCAGGCACGTGACGTCACGTGCCAACTGCACCAAGACATCCACGCAGTGCAAGAATAAGGTGGAGTCCATGAAGAAGAGGTACAGATCAGAATCAGCAGCCGCAGATCACGGTTCCTCTTCTTGGCCGTTCTATTCAAGGCTTGATCTTCTTCTCAGGGGAACTgcccccccgccgccgccgcctccgccgcagtcgccggtggagccgtcacaaccgcctccgGCAGCTCCTTCACTTGCGAATGCACAAAACTCGCATGGATCTTATGGTTATGGGGTTCATGATAAGCTGGCCAAGGTGGTAAATGGAAGCCAAATTCATCAACCTTTGATTTCTATCTCCTTTCCAATCTTCACACATGACTCCAAGTTGAAGAAAATCAAACAAAATATGGTGGAAGACGAGATGTGGTGTGCCAACTTTCAAGGAAAGGATGATCAAGAAGAGAAGATCTTGCCACAAGGAGGATATTTCCTCCACAAAAGATCATTAGGAGTAAAAACTCCAAAAAGAGAACATGACCTTTAG 750 0.408 MKKRMMEEKEENDKKQSCGMKEECVRKVGFGRGERVKRDEWSEGAVSRLLEAYEAKWVLRNRAKLKGHDWEDVARHVTSRANCTKTSTQCKNKVESMKKRYRSESAAADHGSSSWPFYSRLDLLLRGTAPPPPPPPPQSPVEPSQPPPAAPSLANAQNSHGSYGYGVHDKLAKVVNGSQIHQPLISISFPIFTHDSKLKKIKQNMVEDEMWCANFQGKDDQEEKILPQGGYFLHKRSLGVKTPKREHDL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01850 249 Gene3D - 41 103 - -
Cca04g01850 249 Coils Coil 249 249 - -
Cca04g01850 249 MobiDBLite consensus disorder prediction 127 150 - -
Cca04g01850 249 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 24 168 - -
Cca04g01850 249 Pfam Myb/SANT-like DNA-binding domain 38 123 IPR044822 -
Cca04g01850 249 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 24 168 IPR044823 -
Cca04g01850 249 MobiDBLite consensus disorder prediction 125 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01850 Cca-Chr4 34597205 34598575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01850 37 132 Trihelix Transcription Factor Family AT3G14180 36.634 2.64e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca04g01850 Myb_DNA-bind_4 5.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01850 - - ccaj:109792241 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01850 04 34597205 34598575 Cca04g01850 04 34597205 34598575 ECH