Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01839 ATGAAGAGCAAGGTTCCGTGCTGTTCCGTGTGTCAAACGCGGTACGACGAGGAGCAACGGGTCCCACTTCTTCTCCAATGCGGCCACGGCTTCTGTCGAGAGTGCCTTTCCAGAATGTTCTCCGCGTCAACGGACACCACGCTCACGTGTCCCCGCTGCCGCCACGTGTCCCGCGTCGGAAACTCCGTCCACGCCCTCCCCAAGAACTTCCCCGTCCTGGCGCTCCTCCGCCCGCCCTCGGCTAACGCCGTGAGGTCCGTGCTGGACTTCGATTTCGACTACACCGACgaggaggaggaggaggaggaggaggaggagCGGCGGGGCGGTGGGGGATTGAGGGTGGGGCGGCGGATTGGGGAGGGGAGGACGTGGACGGCGGTGAGGGGCGGGAAGAAGGTGGCGGTGAAGAAGGTGGAGGCGGTGGAGGAGGTGGAGTGGGTGATGGAGAGGCTTGAGTGGTTGCGGAGGGCTTCCATGTGGTGTAGGAATGTGTGCGCCTTTCACGGGGCTGTCAGAGTTGGTCATGATGGATTGTGGCTTCTCATGGATAGGTGTTACGGTTCCATTCACTCTGAGATGCAACGCAACCATGGTAGACTCACTCTCGAGCAAGTCCTAAGATATGGGGCAGACATTACACGAGGGATTGCCGAACTTCATGCTGCAGGCATTATTTGCATGAATATAAAACCATCCAATCTTCTTCTTGATTCGAATGGTCATGCAGTGGTTTCTGATTATGGGCTTGCTGCTATTCTGAAGAAGCATTCTTGTTGGAAGGTCCAACCTGAGTGTGCCTCTTCAAAGAACCACTCCTGTATAGAATGTACAGTGCTCAGTCCACATTACACAGCTCCAGAGGCTTGGGAGCAACCTGCGAAGAAGTCATTAAATTTGTTCTGGGATGATGCAATAGGCATATCAGCAGAGTCTGATGCCTGGAGTTTTGGTTGCACACTGGTGGAGATGTGCACGGGTTCTGTTCCTTGGGCTGGTTTAAGTACAGAGGAAATTTATCAAGCAGTTGTCAAGACAAAGAAACCGCCTCCACAGTATGCTAGTGTGGTTGGTGGTGGAATACCTAGTGATTTGTGGAGGATGATTGGAGATTGCTTACATTTCAAGCCATCTAAAAGGCCTAGTTTTGATGCAATGTTAGCAATATTTCTCCGTCATTTGCAGGGAATACCACGCAGCCTTCCTGCAAGCCCTGATAATGGCTTTGTTAAAAGCTTTTCGTCAAATGTGATGGAGTTGTCCCCTGTGCCTGAATTAGTAGTTTCTCAGCAAAACCCGTTCCATCTTCATCAACTTGTGTCTGAGGGGGATGTCAGAAGTGTTAGAGATCTTCTAGTCAAGGCTGCATCAGATTATGGCAGCAACTACATATCTTCTCTATTGGAAGTTCAAAATGCTGATGGGCAAACTGCTCTCCACTTGGCTTGTAGACGTGGCATGGCAGAACTTGTTGAGGCAATTTTGGAGTATGAGGAGGCAAATGTTAATGTCTTGGACAAAGATGGAGATCCTCCTCTCATTTATGCATTAGCTGCTGGATCCCCAGAATGTGTTCATAATCTTATTAAAAGAGGTGCTAACGTGAGGTCACAATTAAGAGATGGCTTTGGCCCATCTGTTGCTCATGTTTGTGCTCATCATGGTCATCCAGATTGCATGCAAGAATTACTATTAGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGTGAATCTGTACTGCATAGAGCAGTTGCCAAGAAGTCCACTGATTGCGCCCTTGTGATACTGGAAAATGGGGGCAGTAGATCAATGGCCATCTTGAATTCAAAGAATATGACACCGCTTCACTTGTGTGTGGCAACATGGAATGTTCCCGTTGTAAAAAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAATCAATTGACATAGCGAGCCATATGGGCACGGCTTTGTGCATGGCTGCTGCCTCTAAGAAAGACCATGAAAGTGAGGGGAGAGAATTGGTGCAAATACTGCTCACTGCAGGAGCAGATCCATATGCTCAAGATTCACAGCATGGATGGACAGCTTTGCATATAGCTGTTATGGCTGATGATGTTGAATTGGTTAAGGTTATTCTTGCTGCTGGTGTTGATGTTAACATTCGCAATGTGCACAATGGCATACCTCTTCACACAGCCTTAGCTAGGGGATCTAAGTCATGTGTTGAACTACTTCTATCTATTGGGGCAGATTGTAGTTTGCAGGATGATGATGGTAACACTGCTTTCCATATAGCAGCAGAAACAGCAAAAATGATACGTGAAAATCTTAAGTGGCTCATTGTTATGCTTGGGAATCCTAATGCTGATGTCTTAGTCAGAAACCACAGTGGCAAGACTCTACGTGACATCTTGGAGATCCTTCCCCGACAATGGATATCTGAAGATCTGATGGAAGCACTTATGAAGAAAGGAGTTCGTCTCTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTTAGGAAAACTTCCATAACTCCAAAAAATGCACGGGAAGGTGAACTGCAGAAGCGGGTGGGCTTTGTGCAAAGAGTTTCAGACAAAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGTACAGTGTTTTGGCAAATGAAGTAATAAAAGTCATTCCATTAGACAGGGGACAACATGTGCAGCTTAAAGAGGATGTAAAAGAGCCCAGGTTCGGTTGGCCTGGGCAATCTCATGACAGCATTGGAACAGTATTATGTGTTGATGATGATGGTATCATCCGAGTTGGGTTTCCTGGACAATCCAGAGGATGGAAAGCTGACCCAGGAGAGATGGAACGGGTTGAGCAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCTTTTCTTACATCTACAAAGTATGGGTTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCAGACCAGACAGTAGTCTGTTAATTGAACTGAGTTATCTTCAAACTCCATGGCATTGTGAACCAGAGGAGGTCGAGCATGTTGTTCCTTTTAGGATTGGTGATCAGATATGTGTTAAGCGATCTGTTGCAGAACCTAGATATGCTTGGGGAGGTGAGACACATCATAGTGTTGGAAAAATAAGAGAGATTGAGAGTGATGGTCTCCTAATTATAGATATACCAAACCGACCTGTTCCATGGCAGGCAGATCCGTCAGATATGGAGAAGGTGGAAAACTTTAAGGTTGGAGATTGGGTTAGAGTTAAAGCTTCAGTGTCTGCTCCAAGATATGGGTGGGAGGATATTACAAGAAACAGTATTGGAGTAATTCATAGCTTGGAGGAGGATGGCGATATAGGTATTGCCTTTTGCTTCAGGAATAAGCTTTTTACTTGCTCAGTCACTGATGTTGAGAAAGTTCCCCATTTTGAGGTGGGGCAAGAAATTCATGTGATGCCATCTGTCAACCAGCCGCGGCTTGGATGGTCCGAGCAATCACCCTCAACTGTTGGAAAAATAGCAAGAATTGATCTGGATGGTGCACTCAATGTGAGGGTCTCTGGTAGGAAGAGCCTGTGGAAAGTTTCACCTGGAGATGTGGAACAACTTCCAGGATTTGAAGTTGGTGACTGGGTATGCTCAAAACCGAGCCTGGGAAGCAGATCAAGTAATGACTTGAATGGAGTTGGAAGTATAGCTGTTGTTCATAGTGTACAGGATTCTGGTTACTTGGAACTGGCTTTCTGTTTCCGTAAATTAAAGTCATTGACTCATTATACAGAAGTTGAAAAGGTTCCTTGCTTTAAAGTTGGTCAGTATGTTAGGTTCAGAACTGGTTTAGTGGAACCGAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCGAGGCGTTTTAACCAGCATTCATGCTGATGGAGAAGTGAAGGTGGCATTCTTTGGTTTGTCAGGATTGTGGAGAGGAGACCCTGCAGACCTGGAAATTGAACAGATGTTCGAAGTGGGAGAGTGGGTGAGATTAAAAGATGATGCCAATGATTGGAACTCAATAGGGCCAGGTAGTGTTGGTGTTGTGCAAGGCATAGGGCATGAAGGAGAAGAATGGAACAAAAGTACTTATGTTGCCTTTTGTGGAGAGCAAGAAAAATGGGAAGGACCAAGTTCCCACCTTGAAAGAGTTCACAAACTCTTTGCTGGACAGAAGGTTAGAGTTAAACTTAACGTAAAGCAACCAAGATTTGGGTGGTCTGGTCACACCCATGCAAGCATTGAAACGATACAAGCCATTGATGGTGATGGAAAGCTTCGAATACACACACCACCAGAATCAAGAGCATGGATGTTGGACCCATCAGAAGTAGAGGTGGTAGAACAGAAGGGGCTCTGTATTGGAGACTGGGTCAAGGTTAAAGCATCAGTTTCAACCCCAACCCACCATTGGGGAGAGGTGACTCATTCAAGCATAGGAGTGGTGCATCGGATGGAAGATGAGGATCTGTGGGTGGCTTTCTGTTTTATGGAGAGGCTATGGCTTTGTAAGGCATGGGAAATGGAACAAGTAAGGCCATTTAAAGTGGGAGACAATGTTAGAATAAAAGATGGATTGGTGAGCCCAAGGTGGGGTTGGGGAATGGAGACGCATGCCAGCAAGGGCCGGGTGGTAGGGGTAGATGCGAATGGCAAGATAAGAATAAAGTTCCAGTGGAGGGAAGGGAGGCCTCGGGTAGGAGACCCTGCTGATTTTTTCCTTGATGAATGA 4755 0.4629 MKSKVPCCSVCQTRYDEEQRVPLLLQCGHGFCRECLSRMFSASTDTTLTCPRCRHVSRVGNSVHALPKNFPVLALLRPPSANAVRSVLDFDFDYTDEEEEEEEEEERRGGGGLRVGRRIGEGRTWTAVRGGKKVAVKKVEAVEEVEWVMERLEWLRRASMWCRNVCAFHGAVRVGHDGLWLLMDRCYGSIHSEMQRNHGRLTLEQVLRYGADITRGIAELHAAGIICMNIKPSNLLLDSNGHAVVSDYGLAAILKKHSCWKVQPECASSKNHSCIECTVLSPHYTAPEAWEQPAKKSLNLFWDDAIGISAESDAWSFGCTLVEMCTGSVPWAGLSTEEIYQAVVKTKKPPPQYASVVGGGIPSDLWRMIGDCLHFKPSKRPSFDAMLAIFLRHLQGIPRSLPASPDNGFVKSFSSNVMELSPVPELVVSQQNPFHLHQLVSEGDVRSVRDLLVKAASDYGSNYISSLLEVQNADGQTALHLACRRGMAELVEAILEYEEANVNVLDKDGDPPLIYALAAGSPECVHNLIKRGANVRSQLRDGFGPSVAHVCAHHGHPDCMQELLLAGADPNAVDDEGESVLHRAVAKKSTDCALVILENGGSRSMAILNSKNMTPLHLCVATWNVPVVKRWVEVATSDEIAESIDIASHMGTALCMAAASKKDHESEGRELVQILLTAGADPYAQDSQHGWTALHIAVMADDVELVKVILAAGVDVNIRNVHNGIPLHTALARGSKSCVELLLSIGADCSLQDDDGNTAFHIAAETAKMIRENLKWLIVMLGNPNADVLVRNHSGKTLRDILEILPRQWISEDLMEALMKKGVRLSPTIFEVGDWVKFRKTSITPKNAREGELQKRVGFVQRVSDKDNLIVSFCSGEYSVLANEVIKVIPLDRGQHVQLKEDVKEPRFGWPGQSHDSIGTVLCVDDDGIIRVGFPGQSRGWKADPGEMERVEQFKVGDWVRIRPFLTSTKYGLGSVTPGSIGIVYCIRPDSSLLIELSYLQTPWHCEPEEVEHVVPFRIGDQICVKRSVAEPRYAWGGETHHSVGKIREIESDGLLIIDIPNRPVPWQADPSDMEKVENFKVGDWVRVKASVSAPRYGWEDITRNSIGVIHSLEEDGDIGIAFCFRNKLFTCSVTDVEKVPHFEVGQEIHVMPSVNQPRLGWSEQSPSTVGKIARIDLDGALNVRVSGRKSLWKVSPGDVEQLPGFEVGDWVCSKPSLGSRSSNDLNGVGSIAVVHSVQDSGYLELAFCFRKLKSLTHYTEVEKVPCFKVGQYVRFRTGLVEPRWGWRGAQPESRGVLTSIHADGEVKVAFFGLSGLWRGDPADLEIEQMFEVGEWVRLKDDANDWNSIGPGSVGVVQGIGHEGEEWNKSTYVAFCGEQEKWEGPSSHLERVHKLFAGQKVRVKLNVKQPRFGWSGHTHASIETIQAIDGDGKLRIHTPPESRAWMLDPSEVEVVEQKGLCIGDWVKVKASVSTPTHHWGEVTHSSIGVVHRMEDEDLWVAFCFMERLWLCKAWEMEQVRPFKVGDNVRIKDGLVSPRWGWGMETHASKGRVVGVDANGKIRIKFQWREGRPRVGDPADFFLDE 1584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01839 1584 Gene3D - 606 724 IPR036770 -
Cca04g01839 1584 ProSiteProfiles Zinc finger RING-type profile. 8 54 IPR001841 -
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat region circular profile. 474 496 - -
Cca04g01839 1584 SMART ANK_2a 543 572 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 722 751 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 474 504 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 755 786 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 649 684 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 611 642 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 576 605 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 689 718 IPR002110 GO:0005515
Cca04g01839 1584 SMART ANK_2a 508 537 IPR002110 GO:0005515
Cca04g01839 1584 ProSiteProfiles Protein kinase domain profile. 113 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01839 1584 CDD RING-HC_ScPSH1_like 7 54 - -
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat profile. 543 575 IPR002110 GO:0005515
Cca04g01839 1584 Pfam Ankyrin repeats (3 copies) 436 536 IPR002110 GO:0005515
Cca04g01839 1584 Pfam Ankyrin repeats (3 copies) 704 778 IPR002110 GO:0005515
Cca04g01839 1584 Pfam RING-type zinc-finger 8 51 IPR027370 -
Cca04g01839 1584 PRINTS Ankyrin repeat signature 475 490 IPR002110 GO:0005515
Cca04g01839 1584 PRINTS Ankyrin repeat signature 705 719 IPR002110 GO:0005515
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat profile. 474 507 IPR002110 GO:0005515
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat region circular profile. 689 720 - -
Cca04g01839 1584 SUPERFAMILY Protein kinase-like (PK-like) 112 392 IPR011009 -
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat profile. 689 721 IPR002110 GO:0005515
Cca04g01839 1584 Gene3D Transferase(Phosphotransferase) domain 1 92 392 - -
Cca04g01839 1584 Gene3D - 434 605 IPR036770 -
Cca04g01839 1584 SUPERFAMILY RING/U-box 6 63 - -
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat profile. 508 540 IPR002110 GO:0005515
Cca04g01839 1584 SUPERFAMILY Ankyrin repeat 470 768 IPR036770 -
Cca04g01839 1584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Cca04g01839 1584 SMART ring_2 8 53 IPR001841 -
Cca04g01839 1584 Gene3D - 725 822 IPR036770 -
Cca04g01839 1584 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 3 1584 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat profile. 722 754 IPR002110 GO:0005515
Cca04g01839 1584 Pfam Ankyrin repeats (many copies) 546 593 IPR002110 GO:0005515
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat region circular profile. 722 754 - -
Cca04g01839 1584 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Cca04g01839 1584 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 3 1584 - -
Cca04g01839 1584 Pfam Mind bomb SH3 repeat domain 1331 1452 IPR040847 -
Cca04g01839 1584 Pfam Mind bomb SH3 repeat domain 954 1074 IPR040847 -
Cca04g01839 1584 Pfam Mind bomb SH3 repeat domain 830 948 IPR040847 -
Cca04g01839 1584 Pfam Mind bomb SH3 repeat domain 1461 1579 IPR040847 -
Cca04g01839 1584 Pfam Mind bomb SH3 repeat domain 1206 1325 IPR040847 -
Cca04g01839 1584 Pfam Mind bomb SH3 repeat domain 1080 1200 IPR040847 -
Cca04g01839 1584 ProSiteProfiles Ankyrin repeat region circular profile. 508 535 - -
Cca04g01839 1584 Pfam Protein kinase domain 118 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01839 Cca-Chr4 34328514 34347284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01839 116 387 MAP Kinase Kinase Kinase AT4G18950 25.714 2.21e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Cca04g01839 Pkinase 7.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01839 K16279 - gmx:100783181 2843.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01839 04 34328514 34347284 Cca04g01839 04 34328514 34347284 ECH