LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g01835	ATGATATTCAGAAACCTGGGGCCATTTGTGCCAATTATCAAAGTAGCATGGGAAAAAACTATCGCTGTTTCTAAGCTCTTTTGTTTTCTACACATTACCAGCACCTATGTGATCTGCCTTGGTGTGACAGCTGGTCCTAGCATGCTTCCTACAATCGAACTGAGACCAAATCTGTTCTTATTTGAAAAGATCTCAACCCGGTTTGGTAAAGTTGCTTGTGGAGATATTGTAGGCTTGCGTGATCCTCAAGACCCTAGACGCTACTTGACAAAACGTGTGGTTGGATTGGAGGGTGATAGTGTTACATACATTTCAGATCCTGAGAACAATGATAAGCCTGAGACAACTGTGGTTCCAAAGGGTGGCGTTTGGCTAGAGGGAGATAACAAGTATAATAGCCGTGATTCAAGAACTTTTGGGCCTGTTCCTTATGGCCTTATTCAGGGCAAGATGTTTTGGAAGATATTGCCACTTAATGATATTGGACCTTTCTGGGATAAATGA	504	0.4226	MIFRNLGPFVPIIKVAWEKTIAVSKLFCFLHITSTYVICLGVTAGPSMLPTIELRPNLFLFEKISTRFGKVACGDIVGLRDPQDPRRYLTKRVVGLEGDSVTYISDPENNDKPETTVVPKGGVWLEGDNKYNSRDSRTFGPVPYGLIQGKMFWKILPLNDIGPFWDK	167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g01835	167	CDD	S26_SPase_I	45	150	IPR019533	GO:0004252\|GO:0006465
	Cca04g01835	167	PANTHER	PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN	1	165	-	-
	Cca04g01835	167	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	1	165	-	-
	Cca04g01835	167	Pfam	Signal peptidase, peptidase S26	28	103	IPR019533	GO:0004252\|GO:0006465
	Cca04g01835	167	Pfam	Signal peptidase, peptidase S26	114	153	IPR019533	GO:0004252\|GO:0006465
	Cca04g01835	167	Gene3D	Umud Fragment, subunit A	33	165	-	-
	Cca04g01835	167	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	36	52	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca04g01835	167	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	89	101	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca04g01835	167	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	118	137	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca04g01835	167	SUPERFAMILY	LexA/Signal peptidase	36	164	IPR036286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g01835	Cca-Chr4	34196679	34200672	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g01835	48	164	MADS-box Gene Family	AT1G29960	47.863	7.96e-38	124

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g01835	K09647		-	gmx:100526949	233.032