Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01833 ATGGTTCAACATAAAACGTTGACTACTGTGACATTTTGCAACCAATGTGATACACCAGTCGCTGTGACGTTTCCTGTTATACACTCCTGTGACTCCGGTGTAGTGGCGCAGCCAGCTCTAGTCACCTCCGTTGCAGGCCCTTGTCAACTTGTGTCTTTTGGGTTGCAGTTAAATTTGGAgaGGATTGAAACCTCACAGGCCTTCACAGGATGGGATTGTAGCATCTGGATCCACAAGAACGTCATACAAGACATCAAAGCTGTGACATTTTCCATGCTCTACCGTGTACTCGTGGCAAAGACAGCATTTTCACACACGCGCTGGCCAACGTCAAGTAGAGAGCTGAAGAGTAGAGTTTGCTTAATAGAGATAGTTTCTGAGTTGGGATTTCTGGAAGTTACATGTTCTCTCTTCGGGTCCACAGTGCCATCTTCTACCCGTCTTTACATATCTGATTGCTTCCGGAAGTTGCAACACCATGCTTTCAGCTTTCCCTCAACACTCACATCTGACACGTGTTTGGTTGCTAATGATAGGACAAGGGCAGCGATGATATTCAGAAACCTGGGGCCATTTGTGCCAATTATCAAAGTAGCATGGGGAAAAACTATCGCTGTTTCTAAGCTCTTTTGTTTTCTACACATTACCAACACCTATGTGATCAGCCCTGTTGTGACATATGGTCCTAGCATGCTTCCTACAATCGAACTGAGACCAAATGTGTTCTTAATGGAAAAGATCTCAACCCGGTTTGGTAAAGTTGCTTGTGGAGATATTGTAGTCTTGCGTCATCCTCAAGACCCTAGACGCTTCATGACAAAACGCGTGGTTGGATTGGAGGGTGATAGTGTTACATACATTTCAGATCCCGAGAACAATGATAAGCCTGAGACAACTGTGGTTCCAAAGGGTGGTGTTTGGCTAGAGGGAGATAACAAGTATAATAGCCTTGATTCAAGAAAATTTGGGCCTGTTCCTTATGGCCTTATTCAGGGCAAGATGTTTTGGAAGATATTGCCACTTAATGATATTGGACCTTTCTGGGATAAATGA 1053 0.4416 MVQHKTLTTVTFCNQCDTPVAVTFPVIHSCDSGVVAQPALVTSVAGPCQLVSFGLQLNLERIETSQAFTGWDCSIWIHKNVIQDIKAVTFSMLYRVLVAKTAFSHTRWPTSSRELKSRVCLIEIVSELGFLEVTCSLFGSTVPSSTRLYISDCFRKLQHHAFSFPSTLTSDTCLVANDRTRAAMIFRNLGPFVPIIKVAWGKTIAVSKLFCFLHITNTYVISPVVTYGPSMLPTIELRPNVFLMEKISTRFGKVACGDIVVLRHPQDPRRFMTKRVVGLEGDSVTYISDPENNDKPETTVVPKGGVWLEGDNKYNSLDSRKFGPVPYGLIQGKMFWKILPLNDIGPFWDK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01833 350 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 184 348 - -
Cca04g01833 350 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 184 348 - -
Cca04g01833 350 PRINTS Bacterial leader peptidase 1 (S26A) family signature 219 235 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca04g01833 350 PRINTS Bacterial leader peptidase 1 (S26A) family signature 272 284 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca04g01833 350 PRINTS Bacterial leader peptidase 1 (S26A) family signature 301 320 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca04g01833 350 CDD S26_SPase_I 222 333 IPR019533 GO:0004252|GO:0006465
Cca04g01833 350 TIGRFAM sigpep_I_bact: signal peptidase I 210 287 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca04g01833 350 Pfam Signal peptidase, peptidase S26 298 336 IPR019533 GO:0004252|GO:0006465
Cca04g01833 350 Pfam Signal peptidase, peptidase S26 209 286 IPR019533 GO:0004252|GO:0006465
Cca04g01833 350 Gene3D Umud Fragment, subunit A 216 348 - -
Cca04g01833 350 SUPERFAMILY LexA/Signal peptidase 218 347 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01833 Cca-Chr4 34155046 34157693 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01833 231 347 MADS-box Gene Family AT1G29960 48.718 2.22e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01833 K09647 - gmx:100526949 249.595