LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g01833	ATGGTTCAACATAAAACGTTGACTACTGTGACATTTTGCAACCAATGTGATACACCAGTCGCTGTGACGTTTCCTGTTATACACTCCTGTGACTCCGGTGTAGTGGCGCAGCCAGCTCTAGTCACCTCCGTTGCAGGCCCTTGTCAACTTGTGTCTTTTGGGTTGCAGTTAAATTTGGAgaGGATTGAAACCTCACAGGCCTTCACAGGATGGGATTGTAGCATCTGGATCCACAAGAACGTCATACAAGACATCAAAGCTGTGACATTTTCCATGCTCTACCGTGTACTCGTGGCAAAGACAGCATTTTCACACACGCGCTGGCCAACGTCAAGTAGAGAGCTGAAGAGTAGAGTTTGCTTAATAGAGATAGTTTCTGAGTTGGGATTTCTGGAAGTTACATGTTCTCTCTTCGGGTCCACAGTGCCATCTTCTACCCGTCTTTACATATCTGATTGCTTCCGGAAGTTGCAACACCATGCTTTCAGCTTTCCCTCAACACTCACATCTGACACGTGTTTGGTTGCTAATGATAGGACAAGGGCAGCGATGATATTCAGAAACCTGGGGCCATTTGTGCCAATTATCAAAGTAGCATGGGGAAAAACTATCGCTGTTTCTAAGCTCTTTTGTTTTCTACACATTACCAACACCTATGTGATCAGCCCTGTTGTGACATATGGTCCTAGCATGCTTCCTACAATCGAACTGAGACCAAATGTGTTCTTAATGGAAAAGATCTCAACCCGGTTTGGTAAAGTTGCTTGTGGAGATATTGTAGTCTTGCGTCATCCTCAAGACCCTAGACGCTTCATGACAAAACGCGTGGTTGGATTGGAGGGTGATAGTGTTACATACATTTCAGATCCCGAGAACAATGATAAGCCTGAGACAACTGTGGTTCCAAAGGGTGGTGTTTGGCTAGAGGGAGATAACAAGTATAATAGCCTTGATTCAAGAAAATTTGGGCCTGTTCCTTATGGCCTTATTCAGGGCAAGATGTTTTGGAAGATATTGCCACTTAATGATATTGGACCTTTCTGGGATAAATGA	1053	0.4416	MVQHKTLTTVTFCNQCDTPVAVTFPVIHSCDSGVVAQPALVTSVAGPCQLVSFGLQLNLERIETSQAFTGWDCSIWIHKNVIQDIKAVTFSMLYRVLVAKTAFSHTRWPTSSRELKSRVCLIEIVSELGFLEVTCSLFGSTVPSSTRLYISDCFRKLQHHAFSFPSTLTSDTCLVANDRTRAAMIFRNLGPFVPIIKVAWGKTIAVSKLFCFLHITNTYVISPVVTYGPSMLPTIELRPNVFLMEKISTRFGKVACGDIVVLRHPQDPRRFMTKRVVGLEGDSVTYISDPENNDKPETTVVPKGGVWLEGDNKYNSLDSRKFGPVPYGLIQGKMFWKILPLNDIGPFWDK	350

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g01833	350	PANTHER	PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN	184	348	-	-
	Cca04g01833	350	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	184	348	-	-
	Cca04g01833	350	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	219	235	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca04g01833	350	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	272	284	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca04g01833	350	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	301	320	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca04g01833	350	CDD	S26_SPase_I	222	333	IPR019533	GO:0004252\|GO:0006465
	Cca04g01833	350	TIGRFAM	sigpep_I_bact: signal peptidase I	210	287	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Cca04g01833	350	Pfam	Signal peptidase, peptidase S26	298	336	IPR019533	GO:0004252\|GO:0006465
	Cca04g01833	350	Pfam	Signal peptidase, peptidase S26	209	286	IPR019533	GO:0004252\|GO:0006465
	Cca04g01833	350	Gene3D	Umud Fragment, subunit A	216	348	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g01833	Cca-Chr4	34155046	34157693	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g01833	231	347	MADS-box Gene Family	AT1G29960	48.718	2.22e-36	126

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g01833	K09647		-	gmx:100526949	249.595

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