LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g01829	ATGGGGAGTAGAACCAGGGTTGTTGGTGTTGAAGATGACAGGGGAGCTGAAAGAGGGATGCCGAGCTTCAATTCTGAGTGGCCCGTGTCCAATGCAGGCTATACAGAGAGGCAGACAATTGATTCCTTTTGTGTTTCTGACTTTGGAGCATTTGATCAGTCATATCGCATAGCAGATGCTGTTGACCTGAGTAGAAACTCAGTTTACAACTCAGTAAAAGTAAGTAGCCAAACAATTTCTCCAGTTTCTGTTCACATTAGCAGCCTTGGTCAGTTGCCTGCTTCACTTGAAAAAAGCCCGTTAACTAATCAAACAGAGCTGCATAGGTTGCGATTACAGAAGGGTCAATCATCAAATTCTGGCACCACAGTAGTTGGTAATACAGATAATCAAGAGGAGTCTGCCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAAGAATCAGCTGTATGATAGAAATCTATCCATTGTTGCTGTTTCTGACTCTAGTGACAGATCCAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAACCGCGAAGCTGCAAGAAAAAGCCGTTTGAAAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGGATCTTCATATCAAGCTCTGGTGATCAAGCACATACATTGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGGCAAACTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGCTAAAAGGTGTTGCGGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAGCTGATGGGCATTACCAACTTGCAGCAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAGGCATTGCAACAGTCCCTCGCGGAGACATTGTCCACCGGAGCACCTGCGTCATCTGGTTCATCCGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCGACAGGCTGACAATCTTCGCCAGCAGACTCTACAACAAATGCACCGTATACTGACAACACGCCAATCAGCTCGGGCACTCCTTGCTATACATGACTATTTTTCGCGACTGCGTGCTCTCAGTTCCCTCTGGCTGGCTCGCCCTAGAGATTGA	1401	0.4625	MGSRTRVVGVEDDRGAERGMPSFNSEWPVSNAGYTERQTIDSFCVSDFGAFDQSYRIADAVDLSRNSVYNSVKVSSQTISPVSVHISSLGQLPASLEKSPLTNQTELHRLRLQKGQSSNSGTTVVGNTDNQEESAMADASPRTDISTDVDTDDKNQLYDRNLSIVAVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLKKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQTNELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD	466

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca04g01829	466	MobiDBLite	consensus disorder prediction	111	141	-	-
Cca04g01829	466	PANTHER	TRANSCRIPTION FACTOR TGA9	59	466	-	-
Cca04g01829	466	MobiDBLite	consensus disorder prediction	167	200	-	-
Cca04g01829	466	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	179	223	IPR004827	GO:0003700\|GO:0006355
Cca04g01829	466	MobiDBLite	consensus disorder prediction	1	23	-	-
Cca04g01829	466	Pfam	Basic region leucine zipper	177	223	IPR004827	GO:0003700\|GO:0006355
Cca04g01829	466	MobiDBLite	consensus disorder prediction	170	193	-	-
Cca04g01829	466	CDD	bZIP_HBP1b-like	181	233	-	-
Cca04g01829	466	Pfam	Seed dormancy control	264	339	IPR025422	GO:0006351\|GO:0043565
Cca04g01829	466	ProSiteProfiles	DOG1 domain profile.	246	463	IPR025422	GO:0006351\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g01829	Cca-Chr4	34073623	34097374	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g01829	136	466	bZIP Transcription Factor Family	AT3G12250	79.154	0.0	523

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Cca04g01829		DOG1	8.8e-33	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g01829	K14431		-	gmx:100101881	800.045

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g01829	04	34073623	34097374	Cca04g01829	04	34073623	34097374	ECH

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