Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01828 ATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATCTTGACACTGATGACAAGAATCAGCCGTATGATAGAAATCTATCTGTTGTTGCTGTTTCTGATTCTAGTGACAGATCAAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGTGCTAGGCAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAGGAGCAGAATCGGCAAATTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAAATCCTCAAGCTTCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAGCTGATGGGCATTACCAATTTGCAGCAATCCTCCCAACAAGCAGAAGACGCATTGTCTCAGGGCATGGATGCATTGCAACAGTCCCTTGCAGAGACATTGTCCACCGGAGCACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGCTTCATTCGACAGGCTGACAATCTTCGCCAGCAAACTCTACAACAAATGCACCGGATACTGACAACTCGCCAATCAGCACGGGCACTCCTTGCTATACATGACTATTTTTCACGACTGCGTGCTCTCAGTTCCCTCTGGCTGGCTCGCCCTAGAGACTGA 996 0.4649 MADASPRTDISTDLDTDDKNQPYDRNLSVVAVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSEILKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMDALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01828 331 SMART brlzneu 42 105 IPR004827 GO:0003700|GO:0006355
Cca04g01828 331 Coils Coil 122 142 - -
Cca04g01828 331 Gene3D - 45 97 - -
Cca04g01828 331 MobiDBLite consensus disorder prediction 1 48 - -
Cca04g01828 331 PANTHER TRANSCRIPTION FACTOR TGA9 1 331 - -
Cca04g01828 331 SUPERFAMILY Leucine zipper domain 46 89 IPR046347 GO:0003700|GO:0006355
Cca04g01828 331 Pfam Basic region leucine zipper 42 88 IPR004827 GO:0003700|GO:0006355
Cca04g01828 331 Pfam Seed dormancy control 128 204 IPR025422 GO:0006351|GO:0043565
Cca04g01828 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700|GO:0006355
Cca04g01828 331 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 331 - -
Cca04g01828 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700|GO:0006355
Cca04g01828 331 ProSiteProfiles DOG1 domain profile. 111 328 IPR025422 GO:0006351|GO:0043565
Cca04g01828 331 Coils Coil 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01828 Cca-Chr4 34025321 34032608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01828 1 331 bZIP Transcription Factor Family AT3G12250 79.456 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca04g01828 DOG1 5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01828 K14431 - gmx:100101881 590.882