Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01808 TGCTTAAAACACTTGAATTGGATGAGGAGTATGAGGGAAATGTTGAGGCTACTGGAGAGGATTTTTCAGTTGAACCTGCTGAGAGCAGAAGGCCATTCCATGCTCTCCTTGATTTAGGTCTTATCAAGACTACAAATGGCAACCGTGTCTTTGGTTCCCTTAAGGGAGCTCTAGATGGGGGTTTTGATATCCCTCACAATGACAAAAGGTTTGCTGGCTTTGATAAGGATAAGAAGGAGCTTGATCCTGAGGTTCATCGCAAATATATCTTTGATGGACATACATTGATGGAAGATGAACTGGAGAAGCACCAATCACATTTCAGTGACTATATCAAGCGGGGACTAGAGCCTGATGGTCTGGAGGAGCTGTACAAGAAGGTTCATGCTGCCATCCGAGCTGATCCTTCGATTAAGAAATCTGAGAAACAGCCACCTAAAGAGCACAAGAGGTACAACCTCAAGAAACTTACTTATGAGGAGAGAAAGGCCAAGTTGGTTGCTCGCTTGCAGGCTCTCAACTTtgctgttgatggtcatgatgatgacgaagatgatgaCTAA 563 0.4139 LKTLELDEEYEGNVEATGEDFSVEPAESRRPFHALLDLGLIKTTNGNRVFGSLKGALDGGFDIPHNDKRFAGFDKDKKELDPEVHRKYIFDGHTLMEDELEKHQSHFSDYIKRGLEPDGLEELYKKVHAAIRADPSIKKSEKQPPKEHKRYNLKKLTYEERKAKLVARLQALNFAVDGHDDDEDDD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01808 186 MobiDBLite consensus disorder prediction 135 154 - -
Cca04g01808 186 Pfam Ribosomal L18 C-terminal region 120 172 IPR025607 -
Cca04g01808 186 Gene3D - 1 175 - -
Cca04g01808 186 PRINTS Ribosomal protein L5 signature 55 74 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Cca04g01808 186 PRINTS Ribosomal protein L5 signature 35 54 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Cca04g01808 186 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 1 66 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Cca04g01808 186 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 182 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Cca04g01808 186 PANTHER - 1 182 - -
Cca04g01808 186 SUPERFAMILY Translational machinery components 26 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01808 Cca-Chr4 33493563 33494897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01808 1 175 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 71.271 3.67e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01808 K02932 - gmx:100805868 302.367