Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01802 ATGCCAGTGGTAGAAACACTTGGTGGTGCTCTTCTTTCTTCTATCCTTCAGGTTGCATTTGACAGGCTCGCTTCTCGTCAAGTTTTTGACTATTTTGGTGGAAGAAAACTGGATGAGAAGCTGTTGAGGAAATTGAATATGATGTTGCTGTCCATCGATGCTCTGGCTGATGATGCAGAACAAAAGCAGGTCAGAGATCCACGTGTGAGAGCATGGCTTGGTGCTGTCAAAGATGTCATCTTTGAAGCAGAGGATCTCTTGGATGAAATTGACTATGAACTCACCAAATGCAAACTAGAAGCTGAATCTCAAACCAGTGGAAGCCAGGTATGCAACTTAGACATGGAAATTGAATCAAGGATGAAACAAGTCCTTGATGACCTAGAATTTTATGCAAGCCAAAAGGGTTATCTAGGTTTGAAAGAGGTTAGTGGTGGTGGTGTTGGGGTTGAATTAGGATTAGGTAGTAAAGTGTTCCAGAAATTGCCATCAACATCTTTGGTGGTTGAAAGTGTTATTTATGGCAGAGATGATGATAAAGAAATCATCTTTGATTGGCTTACATCTGGGGCTAACAATCATAACCAGCTATCAATACTTTCTATTGTGggcatgggaggggtgggtaagaccacgcttgcccaacatgtgtataatgacccaatgatagaggataaatttgatatcaaagcttgggtttgtgtttcagatgattttgatgttttgatggtaacaagatcaattcttgaggcaatcactgattcagttgataatagtagaggcctagaaatggttcatcagagattgaaagaaaaattgatagggaagagatttcttcttgttttggatgatgtttggaatgaaaaacgagaaaggtgggaagctgtgcaaactcctcttaaatatggggctcctggaagcagaattcttgtcaccacacgcactatgaaagttgcttctaccatgcgatcaaataaagaacttcacctgcaacgattacaagatgatcattgctggaaagtttttgctaaacatgcttttcaggatgacaatcctcagttgaatggtgagctgaaggagattagtataaagatagttgaaaagtgcaaaggattacctctagccttgaaaacgattggaagtcttttatacacaaaatcatctgtttcagaatgggaaagtgtattaacaagcgagatatgggatttagaagatagtgaaataatccctgctttattgttgagctatcaccaccttccttctcatcttaaaagatgctttgcttattgtgccttattccctaaagattatgagtttgacaaggtgcatttaattttgttgtggatggcagaaaattttttacaatgctctcagcaaagtatgaatccaaaagaaattggtgaacagtacttcaatgatttatattctagatccttctttcaacaatcaagTGGATATGGAACATGTTTTGTCATGCATGACCTTCTAAATGATTTGGCAAAATATGTTTGTGGAGACATCTATTTCAGGTTGGGAGTTGATAAAGCAAAAAGTATACCAAAAACAACTCGTCATTTTTCATTTGTAATCAATCACCTTCACTATTTTGATGGGTTTGAAAATTCATATGATGCTAAAAGGTTACGTACATTTATGCCAATTACTGAGGGAATGGATCCTTTTTATCCATGGCATTGCAAGATGCCGATACATGAATTGTTCTCCAAGTTTAAGTTCTTACGTGTTTTGTCTTTGTGTGGTTGTTCTGAACTTACACATGTGCCTGACTCTATTGGAGATCTTAAACATCTTGTTTCGTTGGACCTTTCCCGTACTAACATAAAAAAACTGCCTAATTCAACATGTTTGCTCTATAATTTGCAAATACTGAAGTTGAACCAATGTAGATATTTGGAGGAGCTGCCCTCAAATTTGCATAAACTCACCAATTTGAGTCACCTTGAATTTACTGATACTGAAGTGAAAATGTTGCCAAGGCAAATGGGAAAATTGAAGAATCTTCAAGTATCAATGAGTTCGTTTTATGTTGGCAAAAGTAGTGAGTTCAATATTCAACAATTAAGAGGGCTCAATCTTCATGGAAGGTTATCAGTTGAGGGGCTGCAAAATATTGTGAATCCCTTAGATGCATTAGCAGTGGATTTGAAAAATAAAACAAACCTTGTGGAGCTAGAGTTAGAATGGAATTGGAACCCTAATGATTCAAAGAAAGAAAGAGATGTATTTGATAATCTACAACCTTCCAAACACTTGAAGAATTTGTCAATCAAGAAATATGGTGGGACAAAATTTCCAAGATGGTTGTTCGATAATTCATTACCAAATGTGGTGTCCTTAAGGTTGGAAGACTGTAAATATTGCTCATGTTTGCCTCCCCTTGGGCTTTTGCCGTCTCTCAAGCACTTGACAATTATAGGGCTTGATGGGATAGTGTGTATTGATGCTGAATTTTATGGAAGCAGCTCTTCATCATTCACATCCTTGGAAACATTGGTGTTCTCTGATATGAATGAATGGGAAGAATGGGAATGTAAAGGTGTGACACATGTTTTTCCACATCTTCAATATCTTTCAATAGTGCAATGTCCCAAGCTAAAAGGGTGTCTGCCAGAGCAACTTCTTTGTTTAAAGATGCTAGATATTTCTAATTGTGAACTACTTATGGCTTCTTTCCCCAAGGCTCTAGAAATTTGTCATTTACGCACTTATCTTTGCCCCAAGGTGAATATTCCTATGAGTTCCTGCTACTATTTCCTTGAAACATTGGAGATCGATTGTAGCTGCGACTCTTTAACAACCTTTCCACTAGATTTCTTCCCAAAACTCTCTGTGCTTGATCTCAGGTGTCATAATCTACAAACGATTTCACATGATCACACTCATAATTATCTCAAGGATCTGAGCATTAGTGAGTGTTCTCAATTTGAATCATTTCCTATTGAAGGATTATACGCAGCTTGGCTAGAGAGCTTTCGTATTAAAAGATTGGAGAATCTGAAATCATTGCCTAAACGCATGGATATCCTCCTTCCATTTCTTAAGGAGCTACTCATAAAAGATTGTCCTCGAGTGGAGTTGTTATCTAATGAAGGTTTGCCATCAAATCTAAAAGAGATGAATCTCTCAAATTGCTCCAAACTTGTTGCCTCACTAAAAGGGACTTTGGGAGCCAACACCTCTTTACAAGCCTTGTCTATTGGAGAAGTGGACGTGGAGTCTTTTCCTGAAGAAGGTTTGATACCACTCTCACTTACTTCTCTAAATATTTATAGTTGCCCAGATCTTAGAAAATTGGACTACAAGGGTCTATGCCACCTCTCCTCTCTCGAGGAATTGATTCTTGTTTACTGCCCCAACCTCCAATGCTTACCAAAAGAGGGTCTGCCTAAATCCATTTCAACTCTCAAAATTTGGGGTTGTCCGTTGCTCCAACAACGTTGCCAGAAACAAGGAGGTGAAGACTGGGAAAAAATTGCCAACATTAAAAATGTCATGTTTGGTGATTAA 3528 0.2925 MPVVETLGGALLSSILQVAFDRLASRQVFDYFGGRKLDEKLLRKLNMMLLSIDALADDAEQKQVRDPRVRAWLGAVKDVIFEAEDLLDEIDYELTKCKLEAESQTSGSQVCNLDMEIESRMKQVLDDLEFYASQKGYLGLKEVSGGGVGVELGLGSKVFQKLPSTSLVVESVIYGRDDDKEIIFDWLTSGANNHNQLSILSIVGMGGVGKTTLAQHVYNDPMIEDKFDIKAWVCVSDDFDVLMVTRSILEAITDSVDNSRGLEMVHQRLKEKLIGKRFLLVLDDVWNEKRERWEAVQTPLKYGAPGSRILVTTRTMKVASTMRSNKELHLQRLQDDHCWKVFAKHAFQDDNPQLNGELKEISIKIVEKCKGLPLALKTIGSLLYTKSSVSEWESVLTSEIWDLEDSEIIPALLLSYHHLPSHLKRCFAYCALFPKDYEFDKVHLILLWMAENFLQCSQQSMNPKEIGEQYFNDLYSRSFFQQSSGYGTCFVMHDLLNDLAKYVCGDIYFRLGVDKAKSIPKTTRHFSFVINHLHYFDGFENSYDAKRLRTFMPITEGMDPFYPWHCKMPIHELFSKFKFLRVLSLCGCSELTHVPDSIGDLKHLVSLDLSRTNIKKLPNSTCLLYNLQILKLNQCRYLEELPSNLHKLTNLSHLEFTDTEVKMLPRQMGKLKNLQVSMSSFYVGKSSEFNIQQLRGLNLHGRLSVEGLQNIVNPLDALAVDLKNKTNLVELELEWNWNPNDSKKERDVFDNLQPSKHLKNLSIKKYGGTKFPRWLFDNSLPNVVSLRLEDCKYCSCLPPLGLLPSLKHLTIIGLDGIVCIDAEFYGSSSSSFTSLETLVFSDMNEWEEWECKGVTHVFPHLQYLSIVQCPKLKGCLPEQLLCLKMLDISNCELLMASFPKALEICHLRTYLCPKVNIPMSSCYYFLETLEIDCSCDSLTTFPLDFFPKLSVLDLRCHNLQTISHDHTHNYLKDLSISECSQFESFPIEGLYAAWLESFRIKRLENLKSLPKRMDILLPFLKELLIKDCPRVELLSNEGLPSNLKEMNLSNCSKLVASLKGTLGANTSLQALSIGEVDVESFPEEGLIPLSLTSLNIYSCPDLRKLDYKGLCHLSSLEELILVYCPNLQCLPKEGLPKSISTLKIWGCPLLQQRCQKQGGEDWEKIANIKNVMFGD 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01802 1175 Pfam NB-ARC domain 177 397 IPR002182 GO:0043531
Cca04g01802 1175 PRINTS Disease resistance protein signature 199 214 - -
Cca04g01802 1175 PRINTS Disease resistance protein signature 272 286 - -
Cca04g01802 1175 PRINTS Disease resistance protein signature 369 383 - -
Cca04g01802 1175 PRINTS Disease resistance protein signature 878 894 - -
Cca04g01802 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 430 IPR027417 -
Cca04g01802 1175 ProSiteProfiles Leucine-rich repeat profile. 603 624 IPR001611 GO:0005515
Cca04g01802 1175 Gene3D Ribonuclease Inhibitor 1036 1160 IPR032675 -
Cca04g01802 1175 Gene3D Ribonuclease Inhibitor 684 878 IPR032675 -
Cca04g01802 1175 Gene3D Ribonuclease Inhibitor 879 1035 IPR032675 -
Cca04g01802 1175 Gene3D Ribonuclease Inhibitor 566 678 IPR032675 -
Cca04g01802 1175 PANTHER DISEASE RESISTANCE PROTEIN RP 16 985 IPR044974 GO:0006952
Cca04g01802 1175 PANTHER OS05G0414200 PROTEIN 16 985 - -
Cca04g01802 1175 Gene3D - 34 129 - -
Cca04g01802 1175 Pfam Rx N-terminal domain 12 104 IPR041118 -
Cca04g01802 1175 SUPERFAMILY L domain-like 491 905 - -
Cca04g01802 1175 Gene3D - 332 414 IPR042197 -
Cca04g01802 1175 Gene3D - 157 329 IPR027417 -
Cca04g01802 1175 SUPERFAMILY L domain-like 903 1151 - -
Cca04g01802 1175 Gene3D - 415 502 IPR036388 -
Cca04g01802 1175 CDD AAA 174 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01802 Cca-Chr4 33357793 33363177 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01802 200 446 WRKY Transcription Factor Family AT5G45050 27.734 3.92e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01802 - - gmx:100781012 1623.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01802 04 33357793 33363177 Cca04g01802 04 33357793 33363177 ECH